HsaEX0055282 @ hg19
Exon Skipping
Gene
ENSG00000213742 | RP4-694B14.5
Description
NA
Coordinates
chr20:25614685-25626284:+
Coord C1 exon
chr20:25614685-25614806
Coord A exon
chr20:25615365-25615463
Coord C2 exon
chr20:25626167-25626284
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTCTCTCACCCAGGCT
3' ss Score
10.24
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATGAAGTCTGGCTCTGTTGCCCAAGCTGGAGTGTGTTGGCACCATCTTGGTTCACTGCAACTTCCACCTCCCAGGCTCCAGTGATTCTCCTGCCTCAGCCTCAAGGGTAGCTGAGATTACAG
Seq A exon
GCTGGAGTGCAGTGGCATGATCTCACCTCACTGAGAACCTCCACCTCCAGGGTTCAAGTGATTCTGCTACCTCAACCTCCCAAATAGCTGGGACTACAG
Seq C2 exon
GGTCTCATTCTGTCACCCAGGTTGGAGTGCAGTGGCAACATCATAGCTCACTGCAGCCTTGAACCCCTGGGCTCAAGTGATCCTCCTGCTTCAGCCTCCTGAGTAGCTGGGGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213742_MULTIEX1-3/7=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCACTGCAACTTCCACC
R:
TACTCAGGAGGCTGAAGCAGG
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)