HsaEX0055284 @ hg19
Exon Skipping
Gene
ENSG00000213742 | RP4-694B14.5
Description
NA
Coordinates
chr20:25615365-25658710:+
Coord C1 exon
chr20:25615365-25615463
Coord A exon
chr20:25626167-25626284
Coord C2 exon
chr20:25654488-25658710
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTTTTTGAAACAGGGT
3' ss Score
10.29
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCTGGAGTGCAGTGGCATGATCTCACCTCACTGAGAACCTCCACCTCCAGGGTTCAAGTGATTCTGCTACCTCAACCTCCCAAATAGCTGGGACTACAG
Seq A exon
GGTCTCATTCTGTCACCCAGGTTGGAGTGCAGTGGCAACATCATAGCTCACTGCAGCCTTGAACCCCTGGGCTCAAGTGATCCTCCTGCTTCAGCCTCCTGAGTAGCTGGGGCTACAG
Seq C2 exon
GCACTTTCCCTACATTTTCAAAGGCCTGCATCATCACATCTGCCACAGCATTCTCTATCATTGAGGCATTTTCTCAGGAAATCACCTGTGAAATATTTTGCAGCTAACCACCTACCTGTGCCCCACCAGCCAACATGCTTTACTCCTGCCAGGCAGGTGAGTGGTCCCCAGATCCCTATTTTACCACTTGTTTTGTCAGACTGTTCTTGGTATCAGCTGTGTTGGAGGGAGTTCTCTGCAAAGACCAATATGGGACTGCATATACAGAGATTTTATTTCCAGATATGACTGTGAGAGAATGATGAGGGGAGCAGTTACTTAGTCTATTTGAGCTGTTATAATAAAATACCACTGACTAGGAAATGTATAAAGAGGACTTTATTTTCCCAGAGTTCTGGAGGCTGGGAAGTTCAACATCAAAACATCAGTAGGTGCAGTTGTCTGTTGAGGGCTCATGTCTGTTTCCAAGATGATGCCTTCATGCTGCATCTTTTGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213742_MULTIEX1-5/7=3-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGCATGATCTCACCTC
R:
GCCTGGCAGGAGTAAAGCATG
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)