HsaEX0055285 @ hg19
Exon Skipping
Gene
ENSG00000213742 | RP4-694B14.5
Description
NA
Coordinates
chr20:25626167-25658710:+
Coord C1 exon
chr20:25626167-25626284
Coord A exon
chr20:25654488-25654643
Coord C2 exon
chr20:25657572-25658710
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTCTACTCTGCTCTTTGTAGGCA
3' ss Score
8.22
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTCTCATTCTGTCACCCAGGTTGGAGTGCAGTGGCAACATCATAGCTCACTGCAGCCTTGAACCCCTGGGCTCAAGTGATCCTCCTGCTTCAGCCTCCTGAGTAGCTGGGGCTACAG
Seq A exon
GCACTTTCCCTACATTTTCAAAGGCCTGCATCATCACATCTGCCACAGCATTCTCTATCATTGAGGCATTTTCTCAGGAAATCACCTGTGAAATATTTTGCAGCTAACCACCTACCTGTGCCCCACCAGCCAACATGCTTTACTCCTGCCAGGCAG
Seq C2 exon
CTGTGTCACTCTGGAAGCTTTGATCAGAAAATTGTAGTTGCTGTTGCCTCTGATGTGCAAGTCCAAGATTCTTGGGCCGCAGGACATGTTCTGCATATATTCCTGGAGAATAGACCAACAATGAGACTGAATCAGTAACGAAAAGTCTTCTATGAAAGAAAAACCCAGAACCATATTGCTTTACTGCTTAATTCTAATAAACTCATAAAGAACAACAAACACCAATTCTTCTCAAACTATTCCAAAAAATTGAAGCAGGGCAGGGAGGAATTCTTCCTAACTCATTCTAAAAGGCCAGCATTATCCTGATACCAAAACCAGACAAGGACACAGCAAAAACAGAGAACTACAGGCCAATATCCCTGATGATGCTAAATGGAAAAATCCTCAACAAAATACTAGCAAAACCAATGCAACAACACAGAAAAGATAATACACCATGATCAAATGAGATTTATCCCAAGTATGCAATCATGATTCAACATACACAAATCAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213742_MULTIEX1-6/7=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTCACCCAGGTTGGAGT
R:
ACTGATTCAGTCTCATTGTTGGTCT
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)