HsaEX0055285 @ hg38
Exon Skipping
Gene
ENSG00000213742 | ZNF337-AS1
Description
ZNF337 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40759]
Coordinates
chr20:25645531-25692676:+
Coord C1 exon
chr20:25645531-25645648
Coord A exon
chr20:25673852-25674007
Coord C2 exon
chr20:25688703-25692676
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTCTACTCTGCTCTTTGTAGGCA
3' ss Score
8.22
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTCTCATTCTGTCACCCAGGTTGGAGTGCAGTGGCAACATCATAGCTCACTGCAGCCTTGAACCCCTGGGCTCAAGTGATCCTCCTGCTTCAGCCTCCTGAGTAGCTGGGGCTACAG
Seq A exon
GCACTTTCCCTACATTTTCAAAGGCCTGCATCATCACATCTGCCACAGCATTCTCTATCATTGAGGCATTTTCTCAGGAAATCACCTGTGAAATATTTTGCAGCTAACCACCTACCTGTGCCCCACCAGCCAACATGCTTTACTCCTGCCAGGCAG
Seq C2 exon
TGAAAGGAAAATAAAAACGTTGGAACCCAAACCACTCTGCCAAAAGAAAAATATTAAGCTGAAAGCTGATTCATCCAAGAAGCTACCTTTCCTTTTGTTCCTAAGCGGAGAACTACAGATAGGTTAAGTAAGGGTAAGTATCTCTGCCGGGCGCGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCGGGCCTCCTCCTCGTGGTCAGGAGATTGAGACCGTCCTGGCTAACACCGTGAAACCCGTCTCTACTGAAAATACAAAAAAATACAAAAAATAGCCGGGAGTGGTGGCGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCGCTCCAGCCTGAGCAAGAGTGAGACTCCGTCACAAAAAAAAAAAAAAAAAAAATTAGTCGGGTGTGGTGGCGAGCGCCTGTAGTCCCAGCTACTCAGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213742_MULTIEX1-7/8=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTCAAGTGATCCTCCT
R:
AGCCTCCCAAAGTGCTAGGAT
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development