HsaEX0073460 @ hg38
Exon Skipping
Gene
ENSG00000130684 | ZNF337
Description
zinc finger protein 337 [Source:HGNC Symbol;Acc:HGNC:15809]
Coordinates
chr20:25674215-25696841:-
Coord C1 exon
chr20:25696759-25696841
Coord A exon
chr20:25685996-25686122
Coord C2 exon
chr20:25674215-25677037
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCCTGGGTTTTGTGTTACAGGCT
3' ss Score
8.82
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
AGATCCCTGGGCGTCAGCGAGCCGTGAGATGCGTGGTCCACCATCGGTGACCTCACCGCCTCGGTTCGCCCTCAGCCGCCCCG
Seq A exon
GCTTTCTTGGCATTTGGGGATGTCACTGTGGATTTCACCCAGAAGGAATGGAGGCTGCTGAGCCCTGCTCAGAGGGCCCTGTACAGGGAGGTGACACTGGAGAACTACAGCCACCTGGTCTCACTAG
Seq C2 exon
GAATATATGCAGAACATGTCCTGCGGCCCAAGAATCTTGGACTTGCACATCAGAGGCAACAGCAACTACAATTTTCTGATCAAAGCTTCCAGAGTGACACAGCTGAAGGTCAAGAGAAAGAAAAAAGCACTAAGCCCATGGCATTTTCCAGCCCACCCCTAAGACATGCAGTAAGCTCAAGGAGGAGGAACAGTGTAGTGGAAATAGAGTCTAGTCAAGGCCAGAGGGAAAATCCTACAGAAATAGACAAAGTATTGAAAGGAATAGAAAATTCAAGATGGGGAGCATTCAAGTGTGCAGAGCGTGGGCAAGACTTCAGCCGGAAGATGATGGTAATCATACACAAAAAAGCACATTCCAGGCAGAAACTTTTTACATGCAGGGAGTGTCACCAGGGCTTTAGAGATGAGTCAGCATTGCTCTTGCACCAGAACACACACACAGGAGAGAAGTCCTATGTGTGCAGTGTGTGTGGGCGAGGCTTCAGCCTCAAGGCCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130684_MULTIEX1-5/8=C1-8
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.124
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF054957=zf-CHY=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF0009621=zf-C2H2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGATGCGTGGTCCAC
R:
ACTGTTCCTCCTCCTTGAGCT
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development