HsaEX1045020 @ hg38
Exon Skipping
Gene
ENSG00000213742 | ZNF337-AS1
Description
ZNF337 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40759]
Coordinates
chr20:25634729-25692676:+
Coord C1 exon
chr20:25634729-25634827
Coord A exon
chr20:25670111-25670264
Coord C2 exon
chr20:25688703-25692676
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATTGCAATCGTTTTTTGTAGGAA
3' ss Score
7.63
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCTGGAGTGCAGTGGCATGATCTCACCTCACTGAGAACCTCCACCTCCAGGGTTCAAGTGATTCTGCTACCTCAACCTCCCAAATAGCTGGGACTACAG
Seq A exon
GAAAACATTCTGCCTGTGTTGCAATATCCAGAAACTCCTAGATATACTGATCAACAGCAGTTTGAATGTTTTCCTGATCAGTGCCATTGACATAGTCCTGACTCACCAGAGAAGCAAAGCAAGCCTCGAAAGATGGCTCCAATTCATTCACCAG
Seq C2 exon
TGAAAGGAAAATAAAAACGTTGGAACCCAAACCACTCTGCCAAAAGAAAAATATTAAGCTGAAAGCTGATTCATCCAAGAAGCTACCTTTCCTTTTGTTCCTAAGCGGAGAACTACAGATAGGTTAAGTAAGGGTAAGTATCTCTGCCGGGCGCGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCGGGCCTCCTCCTCGTGGTCAGGAGATTGAGACCGTCCTGGCTAACACCGTGAAACCCGTCTCTACTGAAAATACAAAAAAATACAAAAAATAGCCGGGAGTGGTGGCGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCGCTCCAGCCTGAGCAAGAGTGAGACTCCGTCACAAAAAAAAAAAAAAAAAAAATTAGTCGGGTGTGGTGGCGAGCGCCTGTAGTCCCAGCTACTCAGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213742_MULTIEX1-6/8=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGCATGATCTCACCTC
R:
CCCGGCAGAGATACTTACCCT
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains