HsaEX0055286 @ hg38
Exon Skipping
Gene
ENSG00000213742 | ZNF337-AS1
Description
ZNF337 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40759]
Coordinates
chr20:25673852-25677052:+
Coord C1 exon
chr20:25673852-25674007
Coord A exon
chr20:25674897-25675078
Coord C2 exon
chr20:25676936-25677052
Length
182 bp
Sequences
Splice sites
3' ss Seq
GACACATGGGTTGAATTCAGGTT
3' ss Score
4.36
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GCACTTTCCCTACATTTTCAAAGGCCTGCATCATCACATCTGCCACAGCATTCTCTATCATTGAGGCATTTTCTCAGGAAATCACCTGTGAAATATTTTGCAGCTAACCACCTACCTGTGCCCCACCAGCCAACATGCTTTACTCCTGCCAGGCAG
Seq A exon
GTTCTCTGTAGCCCTCTGGATTCTGTCTGCCTCTGTTATATCTTCACGAACAAGTTATGCAGCCTCAACTAAAGCTTGTAACAAAGCAAAGTTACTCTCCTGAGTGTGTCCTCTGATGGATGGTGAGATATAACTTCAAGATGAAGCCTCACCCACACTCCCTGTACAAAAACGCTTCTCAC
Seq C2 exon
CTGTGTCACTCTGGAAGCTTTGATCAGAAAATTGTAGTTGCTGTTGCCTCTGATGTGCAAGTCCAAGATTCTTGGGCCGCAGGACATGTTCTGCATATATTCCTGGAGAATAGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213742-'28-29,'28-27,30-29
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACATTTTCAAAGGCCTGC
R:
TATGCAGAACATGTCCTGCGG
Band lengths:
246-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development