HsaINT1047404 @ hg38
Intron Retention
Gene
ENSG00000213742 | ZNF337-AS1
Description
ZNF337 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40759]
Coordinates
chr20:25673852-25675078:+
Coord C1 exon
chr20:25673852-25674007
Coord A exon
chr20:25674008-25674896
Coord C2 exon
chr20:25674897-25675078
Length
889 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GACACATGGGTTGAATTCAGGTT
3' ss Score
4.36
Exon sequences
Seq C1 exon
GCACTTTCCCTACATTTTCAAAGGCCTGCATCATCACATCTGCCACAGCATTCTCTATCATTGAGGCATTTTCTCAGGAAATCACCTGTGAAATATTTTGCAGCTAACCACCTACCTGTGCCCCACCAGCCAACATGCTTTACTCCTGCCAGGCAG
Seq A exon
GTGAGTGGTCCCCAGATCCCTATTTTACCACTTGTTTTGTCAGACTGTTCTTGGTATCAGCTGTGTTGGAGGGAGTTCTCTGCAAAGACCAATATGGGACTGCATATACAGAGATTTTATTTCCAGATATGACTGTGAGAGAATGATGAGGGGAGCAGTTACTTAGTCTATTTGAGCTGTTATAATAAAATACCACTGACTAGGAAATGTATAAAGAGGACTTTATTTTCCCAGAGTTCTGGAGGCTGGGAAGTTCAACATCAAAACATCAGTAGGTGCAGTTGTCTGTTGAGGGCTCATGTCTGTTTCCAAGATGATGCCTTCATGCTGCATCTTTTGGAAGGGAGGAGCATTGTGTCCTCACAGAGCAGAAAATAGAAGGGCCACAGGACAAACTCCCTCTATCAAGCCTTTTCATAAGGGCACCTGATCCCATTCGCAAAGCTCTATCTTCGTGACTTGACTTAATCACTTCCCAAAGGTCCCACCTCCTAATACTTACACTGTTTCAACAGTAAACAGTTTATGTAGAGTTTCAACATAAATTAAGGAGGGGACAAAACATCCAAACCAAGGAAGGCTGGGAGGGAAGCCAGAGGGAAAGTGCAAGAGGAGGTTTGGTGGAGGTGTCCTAGATTGTTTGCAGTCCAAGGAGGTTGGGGAGAGTGTAACAGGCCTGCCTTGGTATCCCTGCTCTGCAGTCACTGGCTAAGAGCAGTCCTTAGAAAGCACAGCCTGGCACAAATACAACAAGAATATGTGCTCAGTAGGAAAGAGACCACATTTCCCCAATAGCCCAGGTAATGCCCTCCCCTCAACTGGCATCTCTGTTCCCTAAACATTGACCTCTTTTCTCTGAATCTCTTGGGGACACATGGGTTGAATTCAG
Seq C2 exon
GTTCTCTGTAGCCCTCTGGATTCTGTCTGCCTCTGTTATATCTTCACGAACAAGTTATGCAGCCTCAACTAAAGCTTGTAACAAAGCAAAGTTACTCTCCTGAGTGTGTCCTCTGATGGATGGTGAGATATAACTTCAAGATGAAGCCTCACCCACACTCCCTGTACAAAAACGCTTCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213742:ENST00000455791:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCCCTACATTTTCAAAGGCCT
R:
TGAGAAGCGTTTTTGTACAGGGA
Band lengths:
335-1224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains