HsaINT1047405 @ hg38
Intron Retention
Gene
ENSG00000213742 | ZNF337-AS1
Description
ZNF337 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40759]
Coordinates
chr20:25674897-25677052:+
Coord C1 exon
chr20:25674897-25675078
Coord A exon
chr20:25675079-25676935
Coord C2 exon
chr20:25676936-25677052
Length
1857 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TTCTTTCTCTTGACCTTCAGCTG
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTTCTCTGTAGCCCTCTGGATTCTGTCTGCCTCTGTTATATCTTCACGAACAAGTTATGCAGCCTCAACTAAAGCTTGTAACAAAGCAAAGTTACTCTCCTGAGTGTGTCCTCTGATGGATGGTGAGATATAACTTCAAGATGAAGCCTCACCCACACTCCCTGTACAAAAACGCTTCTCAC
Seq A exon
GTAAGTGTCTCTTTAAGTGCTTACTGTAGTATGACTTATTGCTAAACTTTCGTCCACACTCTTGGCATTCATAAGGCCTCTCTCCTGTGTGTATTCTTTCATGCACAGTGAGGTCTGACTTACTGGTATAGCCTCGCTTACACTCCTGGCAAACAAAAGGCTTCTCCTTTGAGTGTATCCGCCAGTGGTGTCTGGTGAGACTTCTCTTCCAGCTGAAGCCTTGCCCACACACATTACACACGAAGGGCTTCTCCCCTGAGTGTGTCCTCTGGTGTGTGAGGAGATTTCCCTTCCAGTTGAAGCCTCGCCCACACTCCTTGCATACAAAAGGCTGCTTGCCAGAATGTGCAAGCTGGTGTTTCACAAGATTTGACTTCCAGATAAATCCTTGCCCACATTCACTACAGATGAAAGGCTTCTCCCCTGAGTGTGTCTTCTGGTGGAAGAGGAGAGTTGATTTTAGGATGAAGCCTCGCCCGCAATCCTTGCAATTAAATGGCCTTTCCCCCGAGTGTGTCCACTGATGTCTAAGAAGATTTGCCTTCAAACTAAAACTTTTCTCACACTGCTTGCACATGAAGGGCTTCTCTCCTGAGTGTGTCCTCTGATGTATGGTGAGATTTGGCTTCAAGGTAAAGCCTCGCCCACAATCCCTGCAGAAAAAACGTTTCTCACCCAAGTGTGCCCTCAGGTGCTTGTTATAGGAGGACTTATCCCGAAACCTTCGCCCACACTCCCGACATCCATAAGGCTTCTCCTCTGAGTGTGTCCTCTGGTGTAAAGTGAAGGTTGACTTTTGGATAAAGCCTCGTCCACAGTCCTTGCACACAAAAGGCTTCTCCTCTGAGTGTGTGATCTGATGTTTCACAAGGGTTGACTTCTGAATAAATCCTTGCCCACATTCTCTACAAACAAAAGGTTTCTCCCCTGAGTGTGTTCTCTGGTGGTAGACAAGAGTTGACTTTTGGCTAAAGCTTCGCTCACAATCCTTGCACACAAAAGGCTTCTCCCCTGAGTGTGTTCTCTGGTGTCTGAGGAGACTTCCTTTCACGCTAAAACTTTGCTTACACTGCCTGCACGCAAAGGGCTTCTCCCCTGAGTGTGTCCTCTGGTGTGTGATAAGGTGTGACTTATTGCTAAAGCCTCGGCCACACTCCTGGCATCTGTAAGGCTTCTCTCCTGAGTGTATTCTCTTGTGCACAACGAAGTATGACTTATTAGTATAGCCTCGCCCACACTCCTTGCACACAAAAGGCTTCTCCCCTGAATGCGCCTTCAAGTGCTTGTTGTATGAGGACTTATCGTTAAACCTTCGCCCACACTCCTGGCATTCATAAGGCTTCTCTCCTGTGTGTGTTCTCTCATGCACAGTGAGGTATGACTTACTGGTATAGCCTCGTCCACACACCTTGCACAGAAAAGGCTTCTCTCCTGAGTGTGTCCTCTGGTGTCTGAGGAGGTTGGCCTTGAGGCTGAAGCCTCGCCCACACACACTGCACACATAGGACTTCTCTCCTGTGTGTGTGTTCTGGTGCAAGAGCAATGCTGACTCATCTCTAAAGCCCTGGTGACACTCCCTGCATGTAAAAAGTTTCTGCCTGGAATGTGCTTTTTTGTGTATGATTACCATCATCTTCCGGCTGAAGTCTTGCCCACGCTCTGCACACTTGAATGCTCCCCATCTTGAATTTTCTATTCCTTTCAATACTTTGTCTATTTCTGTAGGATTTTCCCTCTGGCCTTGACTAGACTCTATTTCCACTACACTGTTCCTCCTCCTTGAGCTTACTGCATGTCTTAGGGGTGGGCTGGAAAATGCCATGGGCTTAGTGCTTTTTTCTTTCTCTTGACCTTCAG
Seq C2 exon
CTGTGTCACTCTGGAAGCTTTGATCAGAAAATTGTAGTTGCTGTTGCCTCTGATGTGCAAGTCCAAGATTCTTGGGCCGCAGGACATGTTCTGCATATATTCCTGGAGAATAGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213742:ENST00000455791:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTAGCCCTCTGGATTCTGT
R:
TGGTCTATTCTCCAGGAATATATGCA
Band lengths:
295-2152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains