HsaEX0055286 @ hg19
Exon Skipping
Gene
ENSG00000213742 | RP4-694B14.5
Description
NA
Coordinates
chr20:25654488-25658710:+
Coord C1 exon
chr20:25654488-25654643
Coord A exon
chr20:25655533-25655714
Coord C2 exon
chr20:25657572-25658710
Length
182 bp
Sequences
Splice sites
3' ss Seq
GACACATGGGTTGAATTCAGGTT
3' ss Score
4.36
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GCACTTTCCCTACATTTTCAAAGGCCTGCATCATCACATCTGCCACAGCATTCTCTATCATTGAGGCATTTTCTCAGGAAATCACCTGTGAAATATTTTGCAGCTAACCACCTACCTGTGCCCCACCAGCCAACATGCTTTACTCCTGCCAGGCAG
Seq A exon
GTTCTCTGTAGCCCTCTGGATTCTGTCTGCCTCTGTTATATCTTCACGAACAAGTTATGCAGCCTCAACTAAAGCTTGTAACAAAGCAAAGTTACTCTCCTGAGTGTGTCCTCTGATGGATGGTGAGATATAACTTCAAGATGAAGCCTCACCCACACTCCCTGTACAAAAACGCTTCTCAC
Seq C2 exon
CTGTGTCACTCTGGAAGCTTTGATCAGAAAATTGTAGTTGCTGTTGCCTCTGATGTGCAAGTCCAAGATTCTTGGGCCGCAGGACATGTTCTGCATATATTCCTGGAGAATAGACCAACAATGAGACTGAATCAGTAACGAAAAGTCTTCTATGAAAGAAAAACCCAGAACCATATTGCTTTACTGCTTAATTCTAATAAACTCATAAAGAACAACAAACACCAATTCTTCTCAAACTATTCCAAAAAATTGAAGCAGGGCAGGGAGGAATTCTTCCTAACTCATTCTAAAAGGCCAGCATTATCCTGATACCAAAACCAGACAAGGACACAGCAAAAACAGAGAACTACAGGCCAATATCCCTGATGATGCTAAATGGAAAAATCCTCAACAAAATACTAGCAAAACCAATGCAACAACACAGAAAAGATAATACACCATGATCAAATGAGATTTATCCCAAGTATGCAATCATGATTCAACATACACAAATCAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213742_MULTIEX1-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACATTTTCAAAGGCCTGC
R:
TATGCAGAACATGTCCTGCGG
Band lengths:
246-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)