HsaEX1045017 @ hg38
Exon Skipping
Gene
ENSG00000130684 | ZNF337
Description
zinc finger protein 337 [Source:HGNC Symbol;Acc:HGNC:15809]
Coordinates
chr20:25686391-25696841:-
Coord C1 exon
chr20:25696759-25696841
Coord A exon
chr20:25691500-25691600
Coord C2 exon
chr20:25686391-25686466
Length
101 bp
Sequences
Splice sites
3' ss Seq
GGAACCCTGTCCCTCTCCAGTTC
3' ss Score
6.76
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AGATCCCTGGGCGTCAGCGAGCCGTGAGATGCGTGGTCCACCATCGGTGACCTCACCGCCTCGGTTCGCCCTCAGCCGCCCCG
Seq A exon
TTCTCAGTCTATGGTGACAGCTTTTCCCTGAGAGAGGCACGATGCCACTATTCTTAACTTCTCTCCCCCTGCCAGTCCTGTGTTCCTGAAGCTGGTTTCAT
Seq C2 exon
ATTGGCCATCTGCAAGCTTCCCTTCTCCGTGGAGAGCAGGAAGACAGTCATGGGACCTCAGGGAGCCAGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130684_MULTIEX1-2/8=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.111
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCCTGGGCGTCAGC
R:
CTGTCTCCTGGCTCCCTGAG
Band lengths:
159-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains