HsaEX0055354 @ hg19
Exon Skipping
Gene
ENSG00000230124 | RP5-1180C10.2
Description
NA
Coordinates
chr1:180243786-180250521:-
Coord C1 exon
chr1:180250441-180250521
Coord A exon
chr1:180244341-180244547
Coord C2 exon
chr1:180243786-180243889
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCCCCACATTTTAGTTT
3' ss Score
8
5' ss Seq
CAGGTTCAT
5' ss Score
3.89
Exon sequences
Seq C1 exon
CTGAGTAGAATCCTGGGCCCAAGGGGAAAGGACAGGAAAGCAATGGAACACCGACTGCGGAGCTTCCATTTGTTCTCCTGA
Seq A exon
TTTTGCTCATTTTACAGCCCACAGCCTGTCTTGTGGAATAAATGATACAAGCAATTGAAGAAGGCACACTGTGCACCAAGGGGACGACTCAGGCAATCTGCAGCGGTGGTCCAGGGCTACTCAGCTCAGCCTCAGTCACCTGCAATGAAAACCACCTCTTGCCATCAGAGTCAATGATATAGATGGGACACTTAAAAACCAAAACAG
Seq C2 exon
GGAAACAATGCCCTAGTGTGGTCTCACAGCCTTCTAGGAATCAGCGGAGGACTTCCATTGAAAATAATGGAAATTCACATTGGCGTACTTTCGATCCTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230124_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTAGAATCCTGGGCCCA
R:
AAGGATCGAAAGTACGCCAATGT
Band lengths:
180-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)