HsaEX0055354 @ hg38
Exon Skipping
Gene
ENSG00000230124 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:HGNC:23339]
Coordinates
chr1:180274651-180281386:-
Coord C1 exon
chr1:180281306-180281386
Coord A exon
chr1:180275206-180275412
Coord C2 exon
chr1:180274651-180274754
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCCCCACATTTTAGTTT
3' ss Score
8
5' ss Seq
CAGGTTCAT
5' ss Score
3.89
Exon sequences
Seq C1 exon
CTGAGTAGAATCCTGGGCCCAAGGGGAAAGGACAGGAAAGCAATGGAACACCGACTGCGGAGCTTCCATTTGTTCTCCTGA
Seq A exon
TTTTGCTCATTTTACAGCCCACAGCCTGTCTTGTGGAATAAATGATACAAGCAATTGAAGAAGGCACACTGTGCACCAAGGGGACGACTCAGGCAATCTGCAGCGGTGGTCCAGGGCTACTCAGCTCAGCCTCAGTCACCTGCAATGAAAACCACCTCTTGCCATCAGAGTCAATGATATAGATGGGACACTTAAAAACCAAAACAG
Seq C2 exon
GGAAACAATGCCCTAGTGTGGTCTCACAGCCTTCTAGGAATCAGCGGAGGACTTCCATTGAAAATAATGGAAATTCACATTGGCGTACTTTCGATCCTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230124_MULTIEX2-4/4=2-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTAGAATCCTGGGCCCA
R:
AAGGATCGAAAGTACGCCAATGT
Band lengths:
180-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development