HsaEX1002422 @ hg38
Exon Skipping
Gene
ENSG00000230124 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:HGNC:23339]
Coordinates
chr1:180275380-180281386:-
Coord C1 exon
chr1:180281306-180281386
Coord A exon
chr1:180276421-180276568
Coord C2 exon
chr1:180275380-180275412
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCCTCCCCACCCCAGTGT
3' ss Score
8.75
5' ss Seq
AGGGTACGC
5' ss Score
8.18
Exon sequences
Seq C1 exon
CTGAGTAGAATCCTGGGCCCAAGGGGAAAGGACAGGAAAGCAATGGAACACCGACTGCGGAGCTTCCATTTGTTCTCCTGA
Seq A exon
TGTTCATGATTGGAGAATTCCCAATAGCACAGAATTGGCTAGGATTAACACAACATCATCCATAAACATGGAACCTCAAGAGAAGTGTCTATGTTTGCAGACTTCTCAAGCAAAAATCATGACCACTGCAGCACACCAAAAAACGAGG
Seq C2 exon
TTTTGCTCATTTTACAGCCCACAGCCTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230124_MULTIEX2-3/4=2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTAGAATCCTGGGCCCA
R:
GCTGTGGGCTGTAAAATGAGC
Band lengths:
106-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains