HsaEX0056304 @ hg19
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:2135]
Coordinates
chr11:9853771-9861243:-
Coord C1 exon
chr11:9861045-9861243
Coord A exon
chr11:9860852-9860961
Coord C2 exon
chr11:9853771-9853967
Length
110 bp
Sequences
Splice sites
3' ss Seq
TAGGCCATTTGCATCCATAGCCC
3' ss Score
3.98
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
TTTCAGATGAGAGTGAGCTCCCCACAAGTACCACCCTGAAGGCCTCCGAGAAGTCTACAATGGAACAGTTGGTGGAAAAAGCTTGTTTCAGAGACTATCAGCGTTTAGGTTTAGGAACCATAAGTGGCAGCTCTTCCCGTTCAAGACCCGAGTATTTTAGAATTACTGCCTCCAACAGGATGTATTCACTCTGCCGGAG
Seq A exon
CCCTGAGATAGATAAAAATGCCTGAAAATAAGAACAAGGTCTCCAGGATACGAGCAAGCATCTCATTGGCATTCTCGGAACAATTACCTTACTGAAAGTACCTCTAGTAG
Seq C2 exon
CTATCCTGGCCTTTTAGTCGTACCTCAAGCTGTACAGGACAGTAGTTTACCAAGAGTAGCTCGCTGCTATCGACACAATCGCCTGCCTGTTGTATGTTGGAAGAACTCAAGAAGTGGTACTCTGCTCCTCCGATCTGGAGGATTCCATGGGAAGGGAGTCGTTGGTCTTTTCAAATCTCAGAACTCCCCTCAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812-'34-36,'34-35,35-36
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PU(14.1=91.0)
A:
PF066029=Myotub-related=PD(3.1=22.2)
C2:
PF066029=Myotub-related=FE(15.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAAGTGGCAGCTCTTCCCG
R:
ACGACTCCCTTCCCATGGAAT
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)