HsaEX0056304 @ hg38
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr11:9832224-9839696:-
Coord C1 exon
chr11:9839498-9839696
Coord A exon
chr11:9839290-9839414
Coord C2 exon
chr11:9832224-9832420
Length
125 bp
Sequences
Splice sites
3' ss Seq
TAGGCCATTTGCATCCATAGCCC
3' ss Score
3.98
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TTTCAGATGAGAGTGAGCTCCCCACAAGTACCACCCTGAAGGCCTCCGAGAAGTCTACAATGGAACAGTTGGTGGAAAAAGCTTGTTTCAGAGACTATCAGCGTTTAGGTTTAGGAACCATAAGTGGCAGCTCTTCCCGTTCAAGACCCGAGTATTTTAGAATTACTGCCTCCAACAGGATGTATTCACTCTGCCGGAG
Seq A exon
CCCTGAGATAGATAAAAATGCCTGAAAATAAGAACAAGGTCTCCAGGATACGAGCAAGCATCTCATTGGCATTCTCGGAACAATTACCTTACTGAAAGTACCTCTAGTAGGTGAGAAGGTGAAAG
Seq C2 exon
CTATCCTGGCCTTTTAGTCGTACCTCAAGCTGTACAGGACAGTAGTTTACCAAGAGTAGCTCGCTGCTATCGACACAATCGCCTGCCTGTTGTATGTTGGAAGAACTCAAGAAGTGGTACTCTGCTCCTCCGATCTGGAGGATTCCATGGGAAGGGAGTCGTTGGTCTTTTCAAATCTCAGAACTCCCCTCAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812_MULTIEX2-1/7=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PU(14.1=91.0)
A:
NO
C2:
PF066029=Myotub-related=FE(15.2=100)
Main Inclusion Isoform:
ENST00000256190fB6119
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAAGTGGCAGCTCTTCCCG
R:
ACGACTCCCTTCCCATGGAAT
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development