HsaEX0056720 @ hg19
Exon Skipping
Gene
ENSG00000165689 | SDCCAG3
Description
serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:10667]
Coordinates
chr9:139302278-139306823:-
Coord C1 exon
chr9:139305487-139306823
Coord A exon
chr9:139304542-139304653
Coord C2 exon
chr9:139302278-139302390
Length
112 bp
Sequences
Splice sites
3' ss Seq
GCCGGTCTTGTCTCCCCCAGCTA
3' ss Score
8.48
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AACACATTTGACTCATCAACCCCAAAGCTTCTTCACCGTTCCAGGGCTTGCCCTTTGCCCATGCCTACCCCTTCTTTCATTCTTCAGCTCTTCCCTTAAATGTCACCCTGATGGAGGACTATCCCTCACCAGTCTAGTCTTTCCTGCTATTTTCTATCATGAAAGGCTGCTTGTTTACTCCAAAGCATTTACGCGACTGCCGATATTTTGTTTACGCTCCAGCCTGTATCCATCTCCTGGAGGCAGCACCTCCGCACCCCTGAAACGGCGCTCGTTGTGTGGGGAGGGGCGACGCCTGTGCTGTCGGAACAAAGTTCCAGCGTGGGGAAAGGCAGGCCCGGTCACTTGGGTGGGAGGAGCGGTGGGTACGGAAAGGGTTCTTAAACGTCAGAGATCAACGGACAGACCGCAGCAACCGAGAGCCTGGACCCTGGTGTCAGAACCCTGCGGGTCTAACAGAGCTGGGCCCCCACCGGCTCAGCCTCCTGAAGGAGCACGCG
Seq A exon
CTAAATTGTGAGCGCCCCCATGGCAGGGACCTGGACTCCCCCTTCTTCGGCATTCGGCCGGCCTTTATGTGCTATGTGCCCAGCCCGGTGCTGGCTTCCGTGGGAGACACAG
Seq C2 exon
ATGACAGATTTGAAGATCTGGAAGAGGCAAATCCATTCTCTTTTAGAGAGTTTCTGAAGACCAAGAACCTCGGCCTCTCGAAAGAGGATCCGGCCAGCAGAATTTATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165689_MULTIEX1-1/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.055 C2=0.318
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGTACGGAAAGGGTTCT
R:
GCATAAATTCTGCTGGCCGGA
Band lengths:
249-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)