BtaEX0031671 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001352 | SDCCAG3
Description
Bos taurus serologically defined colon cancer antigen 3 (SDCCAG3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046140]
Coordinates
chr11:103914650-103916652:-
Coord C1 exon
chr11:103916436-103916652
Coord A exon
chr11:103916185-103916334
Coord C2 exon
chr11:103914650-103914762
Length
150 bp
Sequences
Splice sites
3' ss Seq
CGCTCTTGTTGTTATTACAGCTC
3' ss Score
7.3
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGCGCAAGCAGCGGCCAGCGGCTCGGAGCGGCGGCCGAGCGGCGGGCGACGGAGGCGGGCGACTCGGGCCGCGGCCGGGACGGAGCCGGGGCCATGGAGCCGCCGCTGCCGGGCTGAAGAGGGCTGGCGCCGCGCAGCCCGCGGCGATGGCGGGCTACGCGCGCCGCCCGGGCGTCACCCCGCTGTCCCGGGCCCGGAGCCTCGTCATTCCGGACG
Seq A exon
CTCCCGCGTTCTATGAGCGCCGGTCTTGTCTCCCCCAGCTAGACTGTGAGCGCCCCCCAGCCAGGGACCTGGAGTCCCACTTCTTCGGCATTCGGCCGACGTTTATGTGCTATGTGCCCAGTCCGGTGCTAGCTTCCGTGGGAGACACAG
Seq C2 exon
ATGATAAACTTGGAGATCTGGAAGCGGCAAACCCGTTCTCCTTTAAAGAGTTTTTGAAGACCAAGAACCTGAGCCTGTCGAAAGAGGACACCGACAGCAGAGTTTACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001352_MULTIEX2-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.098 C2=0.329
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000055628fB6187
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGGGCTGAAGAGGG
R:
GTAAACTCTGCTGTCGGTGTCC
Band lengths:
218-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development