HsaEX0057040 @ hg38
Exon Skipping
Gene
ENSG00000075213 | SEMA3A
Description
semaphorin 3A [Source:HGNC Symbol;Acc:HGNC:10723]
Coordinates
chr7:84371824-84492724:-
Coord C1 exon
chr7:84492460-84492724
Coord A exon
chr7:84489096-84489182
Coord C2 exon
chr7:84371824-84371900
Length
87 bp
Sequences
Splice sites
3' ss Seq
AGGTTTCCTTCTTTGCTCAGCAC
3' ss Score
4.99
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAGATGAAGCCTGATAGATCCGCCCAGGTGTAGGTGAAATGGTAGAGCCTCAGGGGTAATAGATTCTGTGCTCTCATGCTGAAGTTTAGTGCTGTGTCTTGACTGGCTCTCTAGCATCAGTGTGATGGGCTGCTCCTGGTACAGTTACAAAGTGAACATGCTTCTTGCTGCTCACATTTATCCCTAATCTGGAGGGCAACCTGGAGCTAGGTAAGAACAGAACAGCCCTTTGACTTCAACGCATGGACAAAGGACAACAAAGGCA
Seq A exon
CACTCATTCTGTCTCCTGCTACCCTGTGAAAAGGTGCCTTCTGCCATTATTGTAAGCTTCCTGAGGCCTCCTCAGCCATGTGGAACT
Seq C2 exon
AATATTTAAAAAAACCATCCATGGGACAGTCTAACATAACAAAGGGAATTATTCATCAAGAAGAGGCCCTTTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075213_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTGTGATGGGCTGCTCC
R:
AGACTGTCCCATGGATGGTTT
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development