HsaEX6008749 @ hg38
Exon Skipping
Gene
ENSG00000075213 | SEMA3A
Description
semaphorin 3A [Source:HGNC Symbol;Acc:HGNC:10723]
Coordinates
chr7:84307207-84372268:-
Coord C1 exon
chr7:84372195-84372268
Coord A exon
chr7:84371824-84371900
Coord C2 exon
chr7:84307207-84307292
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGCTTTGCTTTCCAGAAT
3' ss Score
9.71
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATAGCCGGAAATGTCCAAAGCAGTTAAGAGGGCGAACAGATTTTGTCTAAAAAGATAAGGCAGCTAAACAGAGG
Seq A exon
AATATTTAAAAAAACCATCCATGGGACAGTCTAACATAACAAAGGGAATTATTCATCAAGAAGAGGCCCTTTAGCAG
Seq C2 exon
GGTATTTAAAGTGCCCAGGTACTTACAATAACAAGTTGGACTGAACACATTGTATCTCAGGAATTAAGAATTTTTCCTAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075213-'3-17,'3-13,5-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCGGAAATGTCCAAAGCA
R:
TCCTGAGATACAATGTGTTCAGTCC
Band lengths:
135-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains