HsaEX0057045 @ hg19
Exon Skipping
Gene
ENSG00000075213 | SEMA3A
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A [Source:HGNC Symbol;Acc:10723]
Coordinates
chr7:83823791-84001216:-
Coord C1 exon
chr7:84001140-84001216
Coord A exon
chr7:83936523-83936608
Coord C2 exon
chr7:83823791-83823984
Length
86 bp
Sequences
Splice sites
3' ss Seq
AAACTTGTTTATTTTTATAGGGT
3' ss Score
7.17
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AATATTTAAAAAAACCATCCATGGGACAGTCTAACATAACAAAGGGAATTATTCATCAAGAAGAGGCCCTTTAGCAG
Seq A exon
GGTATTTAAAGTGCCCAGGTACTTACAATAACAAGTTGGACTGAACACATTGTATCTCAGGAATTAAGAATTTTTCCTAAAAGAAG
Seq C2 exon
TTTCCAGATTGTTTGAACTTCTCTGGCCGCACAATACAGGAAGGAAGACTAAAGCAGCAAAGGGACCTACAGCGTCTGCAGCATGGGCTGGTTAACTAGGATTGTCTGTCTTTTCTGGGGAGTATTACTTACAGCAAGAGCAAACTATCAGAATGGGAAGAACAATGTGCCAAGGCTGAAATTATCCTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075213-'6-15,'6-8,9-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF111513=DUF2929=WD(100=68.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAAGAGGCCCTTTAGCAG
R:
CCCATTCTGATAGTTTGCTCTTGC
Band lengths:
179-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)