MmuEX0041581 @ mm10
Exon Skipping
Gene
ENSMUSG00000028883 | Sema3a
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A [Source:MGI Symbol;Acc:MGI:107558]
Coordinates
chr5:13230367-13400069:+
Coord C1 exon
chr5:13230367-13230448
Coord A exon
chr5:13291500-13291577
Coord C2 exon
chr5:13399876-13400069
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATCATGTTTATTTTTAATAGGAA
3' ss Score
7.52
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTATTTTTAAAGCACAATCCATGGGACAGCCTGTAAGGTGACAAAGGAAACAACTCATCAAGGGGCACCTTCATTCCTGCAG
Seq A exon
GAATTTAAAATGTTTGGGTTCTTAAAATAACAAGTTGGACTGAAGAAATGTGTCTTGGGCAGTAAAAACTGGAAAGAG
Seq C2 exon
TTTCCAGATTGTTTGAACTTCTCTGGCCGCACAATACAGGAAGGAAGGCTGCCGCAGCTCAGGGACCTCCAGCGTCTGCAGCATGGGCTGGTTCACTGGGATTGCCTGTCTTTTCTGGGGTGTATTACTTACAGCCAGAGCAAACTATGCAAACGGAAAGAACAATGTGCCAAGACTGAAATTATCGTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028883-'2-15,'2-4,8-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGGAGAGGAGAGGAGA
R:
GACAGGCAATCCCAGTGAACC
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types