HsaEX0057103 @ hg38
Exon Skipping
Gene
ENSG00000168758 | SEMA4C
Description
semaphorin 4C [Source:HGNC Symbol;Acc:HGNC:10731]
Coordinates
chr2:96865867-96867923:-
Coord C1 exon
chr2:96867778-96867923
Coord A exon
chr2:96866283-96866416
Coord C2 exon
chr2:96865867-96865929
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGCAGAGCTGGCCACGGTAGTAC
3' ss Score
-4.8
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
GACAGCTGGCCTGAAGCTCAGAGCCGGGGCGTGCGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAGCAAGGCTGTGGGGCCTGGGCATTGGGGCTGAGGTGTGGTGGAACCTTGTGCCGCGTAAGACAGTGTCTTCTGGGG
Seq A exon
TACGGCGGTTCTCCCAGACCGGCATCCAGGACTTCCTGACACTGACGCTGACGGAGCCCACTGGGCTTCTGTACGTGGGCGCCCGAGAGGCCCTGTTTGCCTTCAGCATGGAGGCCCTGGAGCTGCAAGGAGCG
Seq C2 exon
ATCTCCTGGGAGGCCCCCGTGGAGAAGAAGACTGAGTGTATCCAGAAAGGGAAGAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168758-'9-9,'9-8,10-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(22.1=66.0)
C2:
PF0140314=Sema=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCTCAGAGCCGGGG
R:
TGGTTGTTCTTCCCTTTCTGGA
Band lengths:
197-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development