RnoEX0079318 @ rn6
Exon Skipping
Gene
ENSRNOG00000016254 | Sema4c
Description
semaphorin 4C [Source:RGD Symbol;Acc:1562837]
Coordinates
chr9:43134676-43137076:-
Coord C1 exon
chr9:43136931-43137076
Coord A exon
chr9:43134997-43135145
Coord C2 exon
chr9:43134676-43134738
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTAATCCCTGTTTCTACAGAGC
3' ss Score
8.33
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GGCTGCTGGACTGAAGTTTAGACTCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAGCAGGGCTGTGGGGCCTGGGCATTGGGGCTGAGATGTGGTGGAACCTTGCGCCTCGGAAGACTGTATCTTCTGGGG
Seq A exon
AGCTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCCTGACCCTGACCCTGACAGACCGTTCTGGCCTATTATATGTGGGGGCCCGGGAGGCGCTGTTTGCCTTCAGCGTAGAGGCTCTGGAGCTTCAAGGAGTG
Seq C2 exon
ATCTCCTGGGAGGCTCCAGCTGAGAAGAAAATTGAGTGTACCCAGAAAGGGAAGAGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016254-'12-8,'12-5,15-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(7.7=66.0)
C2:
PF0140314=Sema=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTGGACTGAAGTTTAGA
R:
TGGTTGCTCTTCCCTTTCTGG
Band lengths:
208-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]