HsaEX0057633 @ hg19
Exon Skipping
Gene
ENSG00000116560 | SFPQ
Description
splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:10774]
Coordinates
chr1:35643590-35652723:-
Coord C1 exon
chr1:35652602-35652723
Coord A exon
chr1:35644266-35644355
Coord C2 exon
chr1:35643590-35643637
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACTTCATATACCCTTTGCAGTAA
3' ss Score
6.31
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
ATCCCTATGGTTCAGGAGGCCAGAAATTTCCACCTCTAGGAGGTGGTGGTGGCATAGGTTATGAAGCTAATCCTGGCGTTCCACCAGCAACCATGAGTGGTTCCATGATGGGAAGTGACATG
Seq A exon
TAATCATTCAGGGAGGAAGAAAAACCTGGAACTTGAATGAAGGCTGATCTTTGTTTTGTGCACTGTGGCCCTGCCAGGCATATAGTGAAG
Seq C2 exon
GTAAGAATGATTGATGTTGGCTGATATTGGAGTGCTCATTCACATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116560_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.994 A=NA C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGGTTCAGGAGGCCAGA
R:
TTCATGTGAATGAGCACTCCA
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)