HsaEX0057633 @ hg38
Exon Skipping
Gene
ENSG00000116560 | SFPQ
Description
splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
Coordinates
chr1:35177989-35181606:-
Coord C1 exon
chr1:35181135-35181606
Coord A exon
chr1:35178665-35178754
Coord C2 exon
chr1:35177989-35178036
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACTTCATATACCCTTTGCAGTAA
3' ss Score
6.31
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
ACTGCATATTGTTAAGACCCCAGTGTATTTAATAGGTATTTTATAAGCATAGCCCATTGGCTCATGTTAGTGAAACCATAATCCTCTTTGCTTAGAACATTAAACTCATAAGAAGTACTACAAACCCCACCACTCTTTATAGATGTATTGTACCACTAATATAAACAGCTAAAAAATGGGGAAATTGTAATGTTACGCCTGTGCAATTTTTAAGTGGCATATTATGGCAGATTAAAATTTAGATACTTGGCTTTTCTTGGGCAAGCCACTAAGTTGTGGCGGAATGTTTTCTGGTGTTCTTGGACTGCAATTATGCACTATTAAAGTAGTGGCCTGCTACATAACTGCATTTAGCCAGCATTTCTGCAGTGCGTAACTGTGAGGAACGTAGTACCGCAAATGGCAATGGACATTAGGACCCGGATGTAGTATTCCTGCTTGCTCCAAGATTCTCATTGCCGACTGCATACAG
Seq A exon
TAATCATTCAGGGAGGAAGAAAAACCTGGAACTTGAATGAAGGCTGATCTTTGTTTTGTGCACTGTGGCCCTGCCAGGCATATAGTGAAG
Seq C2 exon
GTAAGAATGATTGATGTTGGCTGATATTGGAGTGCTCATTCACATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116560_MULTIEX1-5/7=4-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCTGCTACATAACTGCA
R:
TGAGCACTCCAATATCAGCCA
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development