HsaEX0072880 @ hg38
Exon Skipping
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35104557-35264470:+
Coord C1 exon
chr1:35104557-35104769
Coord A exon
chr1:35110294-35110447
Coord C2 exon
chr1:35264433-35264470
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTATTTTAATCTCTAAACAGAAA
3' ss Score
8.57
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATTCAGTATGAAGTAAAATACCAAAATGTGAAACATAATCTTTGCAGTAATGCCTGCCTTTCAAAGTTTCACTCTGCTAACAACTTCATCATGAACTGCTGTGAGAACTGTGGCACTTACTGTTACACCAGCTCTAGTCTGTCCCACATACTTCAGATGGAAGGACAGTCTCATTACTTTAATAGTTCAAAGAGTATTACAGCATATAAGCAG
Seq A exon
AAACCTGCCAAACCACTTATATCTGTTCCTTGCAAACCATTGAAGCCCTCAGATGAAATGATTGAGACTACGAGTGATTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCATACAGTAAAGCTAAGATGGAATCTTCTTCAG
Seq C2 exon
CTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056_MULTIEX2-6/9=5-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=NA
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(56.4=31.0),PF064679=zf-FCS=WD(100=52.1)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAATGTGAAACATAATCTTTGCA
R:
CACATGCCTGTAATCCCAGCT
Band lengths:
229-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development