BtaEX6019021 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006555 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr3:111183264-111186613:-
Coord C1 exon
chr3:111186401-111186613
Coord A exon
chr3:111184344-111184497
Coord C2 exon
chr3:111183264-111183410
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTATTTTACTCTCTTAACAGAAA
3' ss Score
10.06
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
ATTCAGTATGAAGTAAAATACCAGAGTGTGAAACATAGTCTTTGCTGTAATGCCTGTTTTTCAAAATTTCACTCCGCTAACAACCTCATCATGAACTGTTGTGAGAATTGTGGAGCTTACTGTTCCACTAGCTCTAGTATGTTTCATATACTTCAAATGGAAGGACAGTCTCATTACTTTAATAGTTCAAAGAGTATTACTACACATAAGCAG
Seq A exon
AAACCAGCCAAATCACTACCACCTGTTCTTTGCAAATCATTGAAGCCCACAGATGAAATGATTGAGACTACCAGTGACTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCTTACAGTAAAGCTAAGATGGAATCTTCTACAG
Seq C2 exon
TTTTATCAATAAATGTTTCAGTGGTACGTGATGCTTCAACGAATCTCCCTTCTCCAAAGAAAGATGCAACTCCAGTTATAAGCAATATAGTGTCATTGGCAGATACTCATGATGCCCTGCCCATTGTGAACTCTGATGTATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006555-'10-12,'10-11,11-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.260
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=52.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTGTGAGAATTGTGGAGCT
R:
CAGAGTTCACAATGGGCAGGG
Band lengths:
254-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]