HsaEX0072880 @ hg19
Exon Skipping
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:26253]
Coordinates
chr1:35570158-35577513:+
Coord C1 exon
chr1:35570158-35570370
Coord A exon
chr1:35575895-35576048
Coord C2 exon
chr1:35577373-35577513
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTATTTTAATCTCTAAACAGAAA
3' ss Score
8.57
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATTCAGTATGAAGTAAAATACCAAAATGTGAAACATAATCTTTGCAGTAATGCCTGCCTTTCAAAGTTTCACTCTGCTAACAACTTCATCATGAACTGCTGTGAGAACTGTGGCACTTACTGTTACACCAGCTCTAGTCTGTCCCACATACTTCAGATGGAAGGACAGTCTCATTACTTTAATAGTTCAAAGAGTATTACAGCATATAAGCAG
Seq A exon
AAACCTGCCAAACCACTTATATCTGTTCCTTGCAAACCATTGAAGCCCTCAGATGAAATGATTGAGACTACGAGTGATTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCATACAGTAAAGCTAAGATGGAATCTTCTTCAG
Seq C2 exon
TAAGTGTTGTTTCTGTGGTGCATGATACTTCAACAGAGCTTCTTTCTCCAAAGAAAGATACGACTCCAGTTATAAGCAATATAGTGTCATTGGCAGACACCGATGTTGCCTTGCCCATCATGAACACTGATGTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056_MULTIEX1-4/5=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.083
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(56.4=31.0),PF064679=zf-FCS=WD(100=52.1)
A:
PF064679=zf-FCS=WD(100=61.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAGAACTGTGGCACTT
R:
TGTTCATGATGGGCAAGGCAA
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)