MmuEX6096154 @ mm9
Exon Skipping
Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:126727988-126731626:-
Coord C1 exon
chr4:126731452-126731626
Coord A exon
chr4:126728519-126728669
Coord C2 exon
chr4:126727988-126728116
Length
151 bp
Sequences
Splice sites
3' ss Seq
TACTTTTAATCTTTAAACAGAAA
3' ss Score
6.69
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AGACATTTTAAGTCTAAAGGATATGAAGAGTGTCCAGTTGGAGGATAGTAGTTGTGACAAAAACTTTTGTAGCCAATCTTGTCTTACATCATATGAAGAAAAAAGAAAACCAGGTGTTACCATATATACTGATAGCAGTTTGCCCAAGTGCAGCATGTGTCAGAAGACATCTACT
Seq A exon
AAACCGCCCAGAATACTTAGATCTTCCCCGTGCAAATCACTGCAGCTGTCAGATGAGATGATTGCGATTACTAACGACTTGGGGAACGTAGAGGTTTACTGCTCTGCTTGTTCTTCTTCATACAACAGTGCTGTGATGGAGTCTCCTTCAG
Seq C2 exon
TTAATGTATCCATGGTGCACAGTTCTTCAAAAGAGAATCTCTGTCCAAAGAAATATCCAGTTATAAGCAATATAATGTCGTTAGTAAATAATCATGTTGACCTGGTCGTGAACACTGATCTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872-'9-10,'9-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(70.5=52.5)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTTGGAGGATAGTAGTTGTGA
R:
GTGTTCACGACCAGGTCAACA
Band lengths:
258-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: