HsaEX0072881 @ hg38
Exon Skipping
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35110294-35264470:+
Coord C1 exon
chr1:35110294-35110447
Coord A exon
chr1:35111772-35111912
Coord C2 exon
chr1:35264433-35264470
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATCTTTTTATTGTTGTCAGTAA
3' ss Score
3.05
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AAACCTGCCAAACCACTTATATCTGTTCCTTGCAAACCATTGAAGCCCTCAGATGAAATGATTGAGACTACGAGTGATTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCATACAGTAAAGCTAAGATGGAATCTTCTTCAG
Seq A exon
TAAGTGTTGTTTCTGTGGTGCATGATACTTCAACAGAGCTTCTTTCTCCAAAGAAAGATACGACTCCAGTTATAAGCAATATAGTGTCATTGGCAGACACCGATGTTGCCTTGCCCATCATGAACACTGATGTCTTACAAG
Seq C2 exon
CTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056_MULTIEX2-7/9=6-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.083 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCCAAACCACTTATATCTGT
R:
CACATGCCTGTAATCCCAGCT
Band lengths:
188-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development