MmuEX0053909 @ mm9
Exon Skipping
Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:126727808-126728669:-
Coord C1 exon
chr4:126728519-126728669
Coord A exon
chr4:126727988-126728116
Coord C2 exon
chr4:126727808-126727845
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTTTATTTTTGTCAGTTA
3' ss Score
5.6
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AAACCGCCCAGAATACTTAGATCTTCCCCGTGCAAATCACTGCAGCTGTCAGATGAGATGATTGCGATTACTAACGACTTGGGGAACGTAGAGGTTTACTGCTCTGCTTGTTCTTCTTCATACAACAGTGCTGTGATGGAGTCTCCTTCAG
Seq A exon
TTAATGTATCCATGGTGCACAGTTCTTCAAAAGAGAATCTCTGTCCAAAGAAATATCCAGTTATAAGCAATATAATGTCGTTAGTAAATAATCATGTTGACCTGGTCGTGAACACTGATCTCTTACAAG
Seq C2 exon
GTACACTTTCTTCTCTACCGACAGATGTCATCATGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCCCAGAATACTTAGATCT
R:
GACATCTGTCGGTAGAGAAGAAAGT
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: