RnoEX0101998 @ rn6
Exon Skipping
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145110080-145111089:-
Coord C1 exon
chr5:145110939-145111089
Coord A exon
chr5:145110260-145110388
Coord C2 exon
chr5:145110080-145110117
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTACTTTTGTCAGTTA
3' ss Score
5.52
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AAACCACCCAGAATACTTAGATCTTTTCCTTGCAAATCACTGAAACTATCAGATGAGATGATTGTGATTACTAATGACTTGGGGAACCTAGAGATTTTCTGCTCTGTTTGTTTTTCTTCATACAACAGTGCTGTGATGGAATCTTCTTCAG
Seq A exon
TTAATGTTTCCATGGTGCACAGTGCTTCAAAAGAGAATGTCTGTCCTAAGAAATACCCAGTCATAAGCAGTATAATGTCATTAGTAAACAATCGTGCTGACCTGGTCGTGAATACTGATCTCTTACAAG
Seq C2 exon
GTACACTTTCTTCTGTACCTACAAATGTCATTGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855-'13-10,'13-9,14-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCACCCAGAATACTTAGATCTT
R:
TCACAATGACATTTGTAGGTACAGA
Band lengths:
186-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]