RnoINT0169108 @ rn6
Intron Retention
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145110260-145111089:-
Coord C1 exon
chr5:145110939-145111089
Coord A exon
chr5:145110389-145110938
Coord C2 exon
chr5:145110260-145110388
Length
550 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
TTTTTGTTTACTTTTGTCAGTTA
3' ss Score
5.52
Exon sequences
Seq C1 exon
AAACCACCCAGAATACTTAGATCTTTTCCTTGCAAATCACTGAAACTATCAGATGAGATGATTGTGATTACTAATGACTTGGGGAACCTAGAGATTTTCTGCTCTGTTTGTTTTTCTTCATACAACAGTGCTGTGATGGAATCTTCTTCAG
Seq A exon
GTAATCCTTAACAGCCTCAAGTTGTGCTATGTACTGGAATATAGCTACGCTTTGCTTTTAATTTATAGTTTTGATTAGCTTCCATATTAAAGTAACTTGAAATTCCAAATGAGTGCTGGAGAGATGTCTTAACAATTAAGAATGCTTGCTGCTCAGTCATGAGGGACCTAAGTTCAAATCCTAGCACCCATGCAACAACATTCACCTCACAAATAAAATAATCTTTATTTTTTAAAAATATCCAAAGGGGTTGGGGATTTAGCTCAGCGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGGAAAAAAAAAAAAAAAAAGAAAAAAAAAATCCAAACATACTGGTAATATAGCTCAGTTGTCAGACTGCTTGCCCAGCGTGCCTGAGACCCCGGGCTCGATGCCCTCCAAGTGTGATGGTGGGCAAACACTCTCCCACTGATTTATAACCCTCAGCACAAAACCACTACTAGACAGTATTTTCTGCTTGATTATAACAATGATTTTTGTTTACTTTTGTCAG
Seq C2 exon
TTAATGTTTCCATGGTGCACAGTGCTTCAAAAGAGAATGTCTGTCCTAAGAAATACCCAGTCATAAGCAGTATAATGTCATTAGTAAACAATCGTGCTGACCTGGTCGTGAATACTGATCTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855:ENSRNOT00000064015:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCACCCAGAATACTTAGATCT
R:
TGTAAGAGATCAGTATTCACGACCA
Band lengths:
278-828
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]