HsaINT0185969 @ hg38
Intron Retention
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35110294-35111912:+
Coord C1 exon
chr1:35110294-35110447
Coord A exon
chr1:35110448-35111771
Coord C2 exon
chr1:35111772-35111912
Length
1324 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
AATCTTTTTATTGTTGTCAGTAA
3' ss Score
3.05
Exon sequences
Seq C1 exon
AAACCTGCCAAACCACTTATATCTGTTCCTTGCAAACCATTGAAGCCCTCAGATGAAATGATTGAGACTACGAGTGATTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCATACAGTAAAGCTAAGATGGAATCTTCTTCAG
Seq A exon
GTAATGTTTGTTTAGCAATTGTAGGGGTTTAGTAATTATTAATAAATAATATTATTTGACTTTAATTTATAACCTTGATTCATTTTCAAATTAAACCGACTTTTAAAAGTCAAAACAATCTAAACTTGTTGCAAAGAACTGTTTTTCAGTATTTTTGTATAAAAGGAAGGCTACTTTACCACCAGAGATTTAATATTTGTAGGCCAAGCACGGTGGCTCATGCCTGTATTCCCAGCACTTTGGGAGGCCAAAGTGGGCAGATCGCCTGAGGTCAGGAGTTTGAGACCAGCCTGGGCAACATGTTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCTGGGCGTGTTGGTGGGTCCCTGTAGTCCCAGCTACTTAGGAGGCTGAGACAGGAGAATCATTTGAACCTGGGTGGTGGAGGTTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGTCTGGGTGACAGAGTGAGACTCCATCTCAAAAATAATAATAATAAAAATTAAAAGATACATGTCTTTTTTTAGATTATTTAGTAAATGAATATATGTATGTTTACATCAATATATATTGAGCACCTACTGCAAAACATGGTACATAGGAGGCACTTGGTCAATATAGAGTTTAATACATTTACAAGACTGCTTTTATTAGAATATAGAATGTTTTACTTAGCCCTGTTTTGTAAAAACAAGTTTTCATTACATTTTTCACATGAAATAGAAGTGATTGTAAATGCTTTAAGACTCAATAATAAAAAAGCACAAATAATCTGAGCCAACTAAGTATTCCATCAAAAAGCCTCATGTAGGACCAGTGGTGCTATTTACATAGACCATAGAGTGACTAATGCCTCTGGGATTTGTAAGTCATACAAACTGGCTTGTTACAGAAATTTCTGCAATAGTGGCTTGGGCACCAACCTAGCGCTCCATTGATGTTAAGGTTTATGAATCCTGGAAGAGTTTGAAATAGATGCCCATTAGGAGATTCAATCAGAATCTCTTTTCTTCATGAGTAATTTCACAGAAAAATTTGCTCATAATTTTAAACAAATTCTTTAAAAGGACTGGGAAATTGTGTACAAAGGTAAAAGACATAAAATGTTGGAGAAGTGTAAATTTTCAGTGTAATGTTGTAATTATAAATACGATACTAAAGAACCTGGCTATTCCTAAGCCCTAATAAAAATTACTTCAGTACCTACCAATTCCTTAAGCTATTAGATGCTTGCATTATTTCTTTAAACAGTATTACTAAACAGTACTTTCTGATGATTGATTTTGCCTTGTTTATAAGAAATCTTTTTATTGTTGTCAG
Seq C2 exon
TAAGTGTTGTTTCTGTGGTGCATGATACTTCAACAGAGCTTCTTTCTCCAAAGAAAGATACGACTCCAGTTATAAGCAATATAGTGTCATTGGCAGACACCGATGTTGCCTTGCCCATCATGAACACTGATGTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056:ENST00000373330:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTGCCAAACCACTTATATCTGT
R:
TTGTAAGACATCAGTGTTCATGATGG
Band lengths:
294-1618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains