HsaEX0072878 @ hg38
Exon Skipping
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35097317-35264470:+
Coord C1 exon
chr1:35097317-35097566
Coord A exon
chr1:35104295-35104469
Coord C2 exon
chr1:35264433-35264470
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCCTTGTTATTTATTCTTAGAGA
3' ss Score
7.14
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTTCACAGTTGACTGCAGGCATTCAGCTTTCTCTGGCATCATCTGGCGTGAATAAAATGCTTCCTTCAGTTTCAACCACAGCTATTCAGGTTTCCTGTGCTGGTTGTAAAAAAATTCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGATCTGCTCAACTTTTCTGCTCCATACCATGCATCACTGAATACATTTCATCTGCCAGTTCACCAGTTCCTTCTAAGAGAACTTGTTCAAACTGCTCAAA
Seq A exon
AGACATTTTAAATCCAAAGGATGTGATTAGTGTCCAGCTGGAAGACACTACCTCTTGCAAAACTTTTTGCAGCCTATCTTGTCTTTCATCATATGAAGAAAAAAGAAAACCATTTGTTACCATATGTACTAATAGCATTTTGACCAAGTGCAGCATGTGCCAGAAGACTGCTATT
Seq C2 exon
CTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056_MULTIEX2-4/9=C1-C2
Average complexity
ME(2-4[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(28.9=15.5)
A:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(38.5=25.4)
C2:
NA
Main Skipping Isoform:
ENST00000373330fB8032
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTCAGCTTTCTCTGGCA
R:
AATCCCAGCTACTCGGGAGG
Band lengths:
258-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development