RnoEX0102003 @ rn6
Exon Skipping
Gene
ENSRNOG00000013855 | Zmym1
Description
zinc finger MYM-type containing 1 [Source:RGD Symbol;Acc:1307027]
Coordinates
chr5:145110939-145118806:-
Coord C1 exon
chr5:145118572-145118806
Coord A exon
chr5:145114361-145114535
Coord C2 exon
chr5:145110939-145111089
Length
175 bp
Sequences
Splice sites
3' ss Seq
CATTTATTGTTTGTTTTTAGAGA
3' ss Score
8.92
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTCCACAGCCGACATCTCTGTTCTCACCTGACGTGAGTAAAATGCTTCCTGCAGTTCCAGGCACAGCTGCTCAGCTTTCCTGTTCCAGTTGTAGAAGAGTCTTTCAGGAGGGACAGACAGCTTTTCAGAGGAAAGGGTCTGCTGAGCTTTTCTGCTCGAGACTCTGCATCGATGGGTGCCCTTTACCTGCTATGTCCCCAGCTCCTCTCAAAAGAATGTGCTTAAACTGCTCAAG
Seq A exon
AGACATTTTAAATCTAAAGGATATGAAGAGCGTCCGATTGGAGGATAGCAGTTGTAACAAAAACTTTTGTAGCCAGTCTTGTCTTACATCATATGAAGAAAAACGAAAGCCATGTGTTACCGTATATACTGAGAGCACTTTGCCTAAGTGCAGCATGTGTCAGAGGACATCCACT
Seq C2 exon
AAACCACCCAGAATACTTAGATCTTTTCCTTGCAAATCACTGAAACTATCAGATGAGATGATTGTGATTACTAATGACTTGGGGAACCTAGAGATTTTCTGCTCTGTTTGTTTTTCTTCATACAACAGTGCTGTGATGGAATCTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013855-'7-8,'7-6,9-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=61.5),PF064679=zf-FCS=PU(27.3=18.5)
A:
PF064679=zf-FCS=PD(70.5=52.5)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000064015fB17064
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGGGTCTGCTGAGCTT
R:
AGATTCCATCACAGCACTGTTGT
Band lengths:
251-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]