BtaEX0041023 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006555 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr3:111184344-111192006:-
Coord C1 exon
chr3:111191757-111192006
Coord A exon
chr3:111186703-111186877
Coord C2 exon
chr3:111184344-111184497
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCTTGTTGTTTATTTTTTAGAGA
3' ss Score
8.84
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTCCTCAGATCACTACAGGCATTCAGCTTTCTCTGGCATCATCTGGCATGAATAAGATGCTTCCTTCAATTTCAACCACAGCTGTTCAGGTTTCCTGTTCTGGTTGTAAAAAAGTTTTTCAAAAGGGACAAACTGCTTATCAGAGGAAAGGTTCTACTGAGCTTTTCTGCTCCACACCATGCATCACTGAATACATTTCATCTGGCAGTTCACCAGCTCTTCCGAAGAGAACTTGTTCAAACTGCTCTAA
Seq A exon
AGACATTTTAAATCTAAAGGATGTGATCAGTATTCAGCTGGAAGATACTACCACTAGCAAAACTTTTTGCAGTCAGTCTTGTCTTTCATCATATGAAGAAAAAAGAAAGCCAGTTGTTACCATATGTGCTAATAGTGTTTCAGCCAAGTGCAGCATGTGTCAGACGACTACTGCT
Seq C2 exon
AAACCAGCCAAATCACTACCACCTGTTCTTTGCAAATCATTGAAGCCCACAGATGAAATGATTGAGACTACCAGTGACTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCTTACAGTAAAGCTAAGATGGAATCTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006555_MULTIEX1-5/6=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(28.9=15.5)
A:
PF064679=zf-FCS=PD(68.9=52.5)
C2:
NO
Main Skipping Isoform:
ENSBTAT00000061426fB7943
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCATTCAGCTTTCTCTGGC
R:
GGTGGTAGTGATTTGGCTGGT
Band lengths:
257-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development