BtaEX0041024 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006555 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr3:111184344-111186877:-
Coord C1 exon
chr3:111186703-111186877
Coord A exon
chr3:111186401-111186613
Coord C2 exon
chr3:111184344-111184497
Length
213 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTTTTTAATCCTAGATT
3' ss Score
7.99
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGACATTTTAAATCTAAAGGATGTGATCAGTATTCAGCTGGAAGATACTACCACTAGCAAAACTTTTTGCAGTCAGTCTTGTCTTTCATCATATGAAGAAAAAAGAAAGCCAGTTGTTACCATATGTGCTAATAGTGTTTCAGCCAAGTGCAGCATGTGTCAGACGACTACTGCT
Seq A exon
ATTCAGTATGAAGTAAAATACCAGAGTGTGAAACATAGTCTTTGCTGTAATGCCTGTTTTTCAAAATTTCACTCCGCTAACAACCTCATCATGAACTGTTGTGAGAATTGTGGAGCTTACTGTTCCACTAGCTCTAGTATGTTTCATATACTTCAAATGGAAGGACAGTCTCATTACTTTAATAGTTCAAAGAGTATTACTACACATAAGCAG
Seq C2 exon
AAACCAGCCAAATCACTACCACCTGTTCTTTGCAAATCATTGAAGCCCACAGATGAAATGATTGAGACTACCAGTGACTTGGGGAAGACAGAGCTTTTCTGCTCTATTAATTGTTTCTCTGCTTACAGTAAAGCTAAGATGGAATCTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006555_MULTIEX1-6/6=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=52.5)
A:
PF064679=zf-FCS=WD(100=52.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGATGTGATCAGTATTCAGCTGG
R:
AAGCAGAGAAACAATTAATAGAGCA
Band lengths:
284-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development