GgaEX1000567 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr23:4311484-4333315:-
Coord C1 exon
chr23:4333274-4333315
Coord A exon
chr23:4315727-4315939
Coord C2 exon
chr23:4311484-4311619
Length
213 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTTCTTCTCTTCCAGATC
3' ss Score
14.3
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
ATGGCGGAGGCCAAGGAGGAGGGGCCCGGCCCCTGCGCCAGG
Seq A exon
ATCAGACATGAAGTGAATTACCAGAACGTCGTACACAAGCTCTGCAGTGATGCCTGCTTCTCCAAGTTCCGCTCTGCTAATAACTTAACCATGAACTGCTGTGAGAATTGTGGAGGTTACTGCTACAGTGGGTCTGGGCAGTGTCGCATGCTGCAGATAGAGGGACAGTCAAAAAAGTTCTGCAGTTCGACATGTGTGACACTGTACAAGCAG
Seq C2 exon
GGAATGAAATGCAAAGGGAAGAAAGGAAGAAAGGCGCACAAAGACAGGAAGAGGAAGCGAAACAAAGGGCAGAAATAGCACTGATCCTAAAGAGGGGCATGTTCTCCCAGAGAGTGATGGTGACTGCAACAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499_MULTIEX1-9/24=C1-16
Average complexity
C3
Mappability confidence:
95%=100=95%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.000 C2=0.391
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
C2:
NO
Main Skipping Isoform:
ENSGALT00000003942fB3804
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGGCCAAGGAGGAG
R:
ACTGTTGCAGTCACCATCACT
Band lengths:
172-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]