DreEX6053321 @ danRer10
Exon Skipping
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14753076-14757029:-
Coord C1 exon
chr17:14756867-14757029
Coord A exon
chr17:14753419-14753625
Coord C2 exon
chr17:14753076-14753223
Length
207 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTTTTCATTCCAGATT
3' ss Score
10.41
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGTCATTGTCAATCTAAAGGACTTGATTACCATCCCTGTGGGCTCCATGAACACACTAAAGGAATTCTGCAGCCAGGCTTGTCTAAGTATTTATAGAGACCGATATGAAGATGCACCTCCAGATCTGTTCACACACTGCAATGTCTGCAAGTTAGTCAAAGAG
Seq A exon
ATTCAGCATGAAGTGACTCATTTGGGTGCCGTGCACAAGCTGTGCAGCGATGAATGCTTTGCACGCTTCAGATCCTCCCGAAACCTCTACATGAGCTACTGTGAAAACTGTGGCAACTGTAAAGCCTCAGGAAACTATCACCTGGTTCAGATAGACGATAGTATTAAGAAGTTTTGCTGCGTCGAATGCATCGCCAATTATAAACAG
Seq C2 exon
AAGAGTGGCAAGCGGCTTCACTGTCCATACTGCCAAGATATCAGAAACATTGATCAGATGATGGAGGGCACGAACATACAGGGCGTCACTGAGTTCTTCTGCTCTCAGAGATGTGTGGCTTTGAGTCAAGCATCTCCCAGTTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-'9-17,'9-16,10-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=56.4),PF064679=zf-FCS=PU(29.4=18.2)
A:
PF064679=zf-FCS=PD(64.7=31.9),PF064679=zf-FCS=WD(100=60.9)
C2:
PF064679=zf-FCS=PU(7.3=6.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTGATTACCATCCCTGTGG
R:
TGTCAAACTGGGAGATGCTTGAC
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]