BtaEX6018993 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110969774-110974106:-
Coord C1 exon
chr3:110973932-110974106
Coord A exon
chr3:110973607-110973819
Coord C2 exon
chr3:110969774-110969924
Length
213 bp
Sequences
Splice sites
3' ss Seq
TGTTACTTTATAATTTCTAGATT
3' ss Score
7.76
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAGTTTGAAAATACCACCACTAGTAAAGATTTTTGTAGTCAGTCGTGTTTGTCAACATATGAACTGAAAAGAAAACCTGTTGTTACCATAAATACAAATAGCATTTCAACTAAATGCAGCATGTGTCAGAAGAATGCTGTT
Seq A exon
ATTCGACATGAAGTTAATTACCAGAATGTGGTACATAAACTTTGCAGTGATGCCTGCTTCTCTAAATTTCGCTCTGCTAACAATCTCACCATGAACTGTTGTGAAAACTGTGGGGGTTACTGCTACAGTGGCTCTGGACAATGCCACATGCTTCAGATAGAGGGACAGTCTAAGAAGTTTTGTAGTTCAACATGTGTCACAGCATATAAGCAG
Seq C2 exon
AAATCAGCCAAAATTACACCGTGTGCGCTTTGCAAATCATTGAGATCCTCAGCAGAAATGATTGAAAATACCAATAGCTTGGGAAAGACAGAGCTTTTCTGTTCTGTTAATTGCTTATCTGCTTACAGAGTTAAAATGGTTACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGTGATCAGTGCCCAGT
R:
TGCAGAAGTAACCATTTTAACTCTGT
Band lengths:
308-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]