MmuEX6096137 @ mm10
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126907086-126911284:-
Coord C1 exon
chr4:126911110-126911284
Coord A exon
chr4:126910790-126911002
Coord C2 exon
chr4:126907086-126907236
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTTGTAATTCTTAGATT
3' ss Score
8.29
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAGTTTGAAAATAGTACCACCAGTAAGGATTTTTGCAGTCAATCATGCTTGTCAACATATGAACTGAAAAAAAAGCCCATTGTTACCATAAACACAAATAGCATTTCAACCAAATGCAGCATGTGCCAGAAGAACGCTGTC
Seq A exon
ATTCGACATGAAGTTAATTACCAGAACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTTTCGAAGTTTCGCTCTGCTAACAACCTCACTATGAACTGTTGTGAGAACTGTGGGGGTTACTGTTATAGTGGCTCTGGACAGTGCCATGTGCTGCAAATTGAGGGGCAGTCTAAGAAGTTTTGTAGTTCAATGTGTGTCACCTCATACAAGCAG
Seq C2 exon
AAATCAGCCAAAATAACACCATGTGCGCTTTGCAAATCATTGAGATCCTCAGCAGAAATGATTGAGAATACCAATAGCTTGGGGAAGACAGAACTTTTCTGTTCTGTTAATTGCTTATCTGCTTACAGAGTTAAAATGGTTACTTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-'27-24,'27-23,28-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGTGATCAGTGCCCAGT
R:
TGCGGAAGTAACCATTTTAACTCTG
Band lengths:
308-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types