DreEX6073953 @ danRer10
Exon Skipping
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40493596-40494868:+
Coord C1 exon
chr19:40493596-40493725
Coord A exon
chr19:40494422-40494637
Coord C2 exon
chr19:40494718-40494868
Length
216 bp
Sequences
Splice sites
3' ss Seq
GCCATTTGTGTTTCTCATAGACT
3' ss Score
8.1
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
AGATATTACTGATTCTAAGGATGTGATCAGTGCACCGGTGGATATGGCAGGGAATCTGAAGGAGTTTTGCAGTCAGAAATGCATCAGTTTATTAAACTTCAAGTGCAGTGTGTGTCAGAAGGCGGGAACA
Seq A exon
ACTTTTACTCACAAAGTGAACTTGATGGACTCCGTCCATATTCTGTGCAGCGACGACTGCTTCAACCAGTTTCGCACCTCCAATAAGCTGAACGGGAACAGCTGTATGAACTGTGGGGGAATCTGCTACGGCACAGACGCTCCATGTCAATCTCTGCAGATAGAGGGCATCGTTATGAAGTTCTGCAAGCCGAGCTGCCTCACAGCCTTCAAAAAG
Seq C2 exon
AAGAGTCTGAAACCTGTCGCTTGCAAAATTTGTCGCACTTTGCACCCGGTTGCCGAAATGCTGGAATGTATGAACGCAGAGGGAATCCGAGAGATTTTCTGCTCTGCCGCCTGTGTCACAGCGAATAAAGTTCAGACTGTCAGTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823-'6-11,'6-9,7-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(73.8=70.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTGATTCTAAGGATGTGATCAGT
R:
CTGAAGAACTGACAGTCTGAACT
Band lengths:
276-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]