GgaEX1000567 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4684444-4685828:-
Coord C1 exon
chr23:4685654-4685828
Coord A exon
chr23:4685327-4685539
Coord C2 exon
chr23:4684444-4684594
Length
213 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTTCTTCTCTTCCAGATC
3' ss Score
14.3
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
AGAAATTCTAAATCCAAAGGATGTAATCACTGCCCAGTTTGACAATACAAATTCCAGTAAGGATTTCTGCAGCCAGTCATGTCTTTCTACGTATGAAATGAAAAGGAAACCTATTATTACTATTCACACTAACAGCATTTCAACCAAGTGCAGCATGTGCCAGAAGAATGCAGTG
Seq A exon
ATCAGACATGAAGTGAATTACCAGAACGTCGTACACAAGCTCTGCAGTGATGCCTGCTTCTCCAAGTTCCGCTCTGCTAATAACTTAACCATGAACTGCTGTGAGAATTGTGGAGGTTACTGCTACAGTGGGTCTGGGCAGTGTCGCATGCTGCAGATAGAGGGACAGTCAAAAAAGTTCTGCAGTTCGACATGTGTGACACTGTACAAGCAG
Seq C2 exon
AAGTCAGCTAAAATTACACCTTGTGCACTGTGTAAATCCTTGAGATCTTCAGCTGAGATGATAGAGAGCACAAATAACTCGGGAAAAACTGAACTGTTTTGCTCTGTTAACTGCTTGTCAGCATATAGAGTAAAAATGGTTACTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'11-11,'11-10,12-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
C2:
PF064679=zf-FCS=PD(95.3=80.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAAGGATGTAATCACTGCCC
R:
CTGACAAGCAGTTAACAGAGCA
Band lengths:
284-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]