MmuEX0053914 @ mm9
Exon Skipping
Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:126728519-126731626:-
Coord C1 exon
chr4:126731452-126731626
Coord A exon
chr4:126731220-126731273
Coord C2 exon
chr4:126728519-126728669
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCCCACATACTTCAGGGG
3' ss Score
6.54
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGACATTTTAAGTCTAAAGGATATGAAGAGTGTCCAGTTGGAGGATAGTAGTTGTGACAAAAACTTTTGTAGCCAATCTTGTCTTACATCATATGAAGAAAAAAGAAAACCAGGTGTTACCATATATACTGATAGCAGTTTGCCCAAGTGCAGCATGTGTCAGAAGACATCTACT
Seq A exon
GGGGAAGAGTGTCCTTACTTGAGTAGTGCAAAGATTACTAATTCATAGAAGCAG
Seq C2 exon
AAACCGCCCAGAATACTTAGATCTTCCCCGTGCAAATCACTGCAGCTGTCAGATGAGATGATTGCGATTACTAACGACTTGGGGAACGTAGAGGTTTACTGCTCTGCTTGTTCTTCTTCATACAACAGTGCTGTGATGGAGTCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872_MULTIEX1-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(70.5=52.5)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTGCAGCATGTGTCAGA
R:
GCAGTAAACCTCTACGTTCCCC
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: