HsaEX0072879 @ hg38
Exon Skipping
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35104295-35264470:+
Coord C1 exon
chr1:35104295-35104469
Coord A exon
chr1:35104557-35104769
Coord C2 exon
chr1:35264433-35264470
Length
213 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTATTAAATCCTAGATT
3' ss Score
6.87
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGACATTTTAAATCCAAAGGATGTGATTAGTGTCCAGCTGGAAGACACTACCTCTTGCAAAACTTTTTGCAGCCTATCTTGTCTTTCATCATATGAAGAAAAAAGAAAACCATTTGTTACCATATGTACTAATAGCATTTTGACCAAGTGCAGCATGTGCCAGAAGACTGCTATT
Seq A exon
ATTCAGTATGAAGTAAAATACCAAAATGTGAAACATAATCTTTGCAGTAATGCCTGCCTTTCAAAGTTTCACTCTGCTAACAACTTCATCATGAACTGCTGTGAGAACTGTGGCACTTACTGTTACACCAGCTCTAGTCTGTCCCACATACTTCAGATGGAAGGACAGTCTCATTACTTTAATAGTTCAAAGAGTATTACAGCATATAAGCAG
Seq C2 exon
CTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056_MULTIEX2-5/9=4-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(38.5=25.4)
A:
PF064679=zf-FCS=PD(56.4=31.0),PF064679=zf-FCS=WD(100=52.1)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATTTTAAATCCAAAGGATGTGA
R:
GCACATGCCTGTAATCCCAGC
Band lengths:
212-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development