HsaEX1036699 @ hg38
Exon Skipping
Gene
ENSG00000116560 | SFPQ
Description
splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
Coordinates
chr1:35177989-35187122:-
Coord C1 exon
chr1:35187001-35187122
Coord A exon
chr1:35181135-35184593
Coord C2 exon
chr1:35177989-35178036
Length
3459 bp
Sequences
Splice sites
3' ss Seq
GTTAATTACTGTTCCAATAGCGT
3' ss Score
4.07
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATCCCTATGGTTCAGGAGGCCAGAAATTTCCACCTCTAGGAGGTGGTGGTGGCATAGGTTATGAAGCTAATCCTGGCGTTCCACCAGCAACCATGAGTGGTTCCATGATGGGAAGTGACATG
Seq A exon
CGTACTGAGCGCTTTGGGCAGGGAGGTGCGGGGCCTGTGGGTGGACAGGGTCCTAGAGGAATGGGGCCTGGAACTCCAGCAGGATATGGTAGAGGGAGAGAAGAGTACGAAGGCCCAAACAAAAAACCCCGATTTTAGATGTGATATTTAGGCTTTCATTCCAGTTTGTTTTGTTTTTTTGTTTAGATACCAATCTTTTAAATTCTTGCATTTTAGTAAGAAAGCTATCTTTTTATGGATGTTAGCAGTTTATTGACCTAATATTTGTAAATGGTCTGTTTGGGCAGGTAAAATTATGTAATGCAGTGTTTGGAACAGGAGAATTTTTTTTTCCTTTTTATTTCTTTATTTTTTCTTTTTTACTGTATAATGTCCCTCAAGTTTATGGCAGTGTACCTTGTGCCACTGAATTTCCAAAGTGTACCAATTTTTTTTTTTTTACTGTGCTTCAAATAAATAGAAAAATAGTTATAATATTGATCTTCAACTTTGCCATTCATGCTTCTATGCATATTAGGCTACGTATTCCACATTGAAAGCATGAGAGTGTCTAGGCCTTTGAATGGCATATGCCATTTCTGGGAAATGCATCTGGAGGCTAAGTATTGCTTTCTACAAATAATTGCCCCCTTTGTTTTAAAAAGAAGAAATGCATATTGAAGTAGTTTGATGATTTGTTTGGCATATAGGAAGCACGCTGGTGCTAAGTATTTTTTAAATGGTTATGTAAGCAAAGCTGAACTGTAAATCTTCAGGAATATGTATTAAGATTGTGGAATGGGTGTAAGACAATTGGTAGGGGGTGAAAGTGGGTTTGATTAAATGGATCTTTTATGGCCCTATGATCTATCCTTTACTTGAAAGCTTTTGAAAAGTGGAAAGGTCATTTTGTTGCATTTCCCCATTTCTTGTTTTTAAAAGACCAACAAATCTCAAGCCCTATAAATGGCTTGTATTGAACTTTTACATTTGAATTAAAGATGTTAAACATGAAGTCTTTTCATGTATTCAAGTGATTTATAAAGATGGGGTGTAGTCTAAAAAACAAAACTTGAAAGTAAGAAGGTTTAGTAACTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAAATCATGAGATCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCAGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGCCAGGAGAATTGCTTGAACCTGGAGATGGAGGTTGCAGTGAGCTGAGACTGCCACTGCACTCCAGCCTGGACAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAGGTTTAGTACTGAAGTAGGTTTAGTTATATATACATTTGTACTCTGTAACTTTTACATCTCCTTGTGCTACTTCTGTTGGGCAAAATCTATAGGACTATAAAAATCTATTGGTTCTCTTCTAAGAGCTAGTGGTGATTGTTAACAAATAGGGTTGCAGATAATCATTCTTATTGTAAATTTAACTTGTTTTCACATAGTTTCGTTTTCATGTAGCACTAAATCTGGAGAAAGTTGCTCATGCTACACAGTACAAATATCCCTTCCTCCCACCATAAAGGCTTGGAATGTTTCCATGGTGTTGTCAGTTAATTGTCAACTTCATTGAACCCCCTTCCATTAGAACAAGAGACTTTGACTATTAAAGTAGATTGTTTATTGTTGCCTGTTAGTATAATGGGAGCCTGATTTCCCAGTGTAAATATGTTAGAGGAACAGCTTCCTAACAGTAGGTAAAGTAATTGAATGGTTTGGCTTTGTTCTGAGTTACGTTCCATTCAAATCTGTACATTGTAGAATTCTTACTATGGAATGTGTCTTCCTCCTTTTCACCTCTTTTCTTGGTGCTAATTGGCAAAAGAAAAATTCTAAGTCAAACCTTTATTAACATGCTGAAGTTTAGTATTGTGCCTGTGTACAAAAGGAGACCTATTGTTGGAACAATCTGAGCACTTTCTGCATAGGAAACAGGATAATGCTGAAAGTAAACACTAGTGTATAAAAGCATCTCACCAAATACTGGTTGTATGACTGACAGGTACATGGTGTGCTAAGGGAGAGAATCTCATTAGAAAGTAATGCTCATTATATCATTCACCAGCACACTCGGAAATATGAGTAGTTTTACCATGATTATATCAGTGAGGAAGTTTTGTCCCCAAACAGGTTATTAATTGGTGATACATAAGAGATTTTCTGTACGGAAACAAGGGTCTTGATTAGAAAGGAATCCATTACAGTTTGGTTGAATTATATAGTAGGGACTCTACTAAAGACAAGAAAATAAGGGGTGTTCCATGGGACACCCACAGAGGGTGAACTTTGAATGTGTGTGGGTGGGGGCTGGTCGGGAAATGGGAAAATCTGCCTATAAAATTAATGTTTCAGTTTATTTTTCAGATTACATGCCTTTCTTTATAAGGGATGCTGGCACAGACCCCCTAAAATAAGCTTTTGGTAGTACTGTACCTTTGAAGAGTGGTGAAGGATGCTAATGGATAATCTCCTGAAAGTTGTGGCTTTTGATACCCTTACTGTGGACTGTAGAGTTGCTAAACGTTGTTTAGCAAATAATGTTGCTTAGTTTCAAATGACATTTGACTTTCATCACTAAAACAGCAATGTACTCAGGGTTGTAAGCTTACTCAAATAGACTTTCAATAAGTCTTCAATGTATATATGATAGTTTTTAGCCTAATGTGAATTTAAATAATCTTAATAGTTTCCTAAAAGTCGATCTGAAACTTGGGGTGGGAAAGGGGAGGTAGCAATTTTTGAAGTATTTTAGCCATTTTTTTCATTTAAAGAAACCACTTGTCCCCATTTCCTCTTCTCCACTTTCTCATAATTTTGTTTTAAGAGGAACACTGGTTGTTTTTTATACTTCTCCTAATCTTTAAAAACTGCATATTGTTAAGACCCCAGTGTATTTAATAGGTATTTTATAAGCATAGCCCATTGGCTCATGTTAGTGAAACCATAATCCTCTTTGCTTAGAACATTAAACTCATAAGAAGTACTACAAACCCCACCACTCTTTATAGATGTATTGTACCACTAATATAAACAGCTAAAAAATGGGGAAATTGTAATGTTACGCCTGTGCAATTTTTAAGTGGCATATTATGGCAGATTAAAATTTAGATACTTGGCTTTTCTTGGGCAAGCCACTAAGTTGTGGCGGAATGTTTTCTGGTGTTCTTGGACTGCAATTATGCACTATTAAAGTAGTGGCCTGCTACATAACTGCATTTAGCCAGCATTTCTGCAGTGCGTAACTGTGAGGAACGTAGTACCGCAAATGGCAATGGACATTAGGACCCGGATGTAGTATTCCTGCTTGCTCCAAGATTCTCATTGCCGACTGCATACAG
Seq C2 exon
GTAAGAATGATTGATGTTGGCTGATATTGGAGTGCTCATTCACATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116560_MULTIEX1-4/7=3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.995 A=1.000 C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000470472fB25575
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains