GgaEX0028139 @ galGal4
Exon Skipping
Gene
ENSGALG00000002514 | SFPQ
Description
splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:HGNC:10774]
Coordinates
chr23:4348149-4357252:+
Coord C1 exon
chr23:4348149-4348270
Coord A exon
chr23:4350866-4352805
Coord C2 exon
chr23:4357208-4357252
Length
1940 bp
Sequences
Splice sites
3' ss Seq
TGTTAATTCTGTTCCAATAGCGT
3' ss Score
6.67
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATCCTTATGCTTCTGCAGCCCAGAAATTTCCACCTCTTGGGGGTGGAGGCGGCATAGGTTATGAAGCTAATCCAGGAGTTGGCCAAGCAGCCATGAGTGGTTCTATGATGGGAAGTGACATG
Seq A exon
CGTCCTGAACGCTTTGGGCAGGGAGGTGCGGGGCCTGTGGGTGGCCAGGGTCCTAGAGGAATGGGGCCTGGAACACCAACAGGATATGGTAGAGGGAGAGAAGAATACGAAGGCCCAAACAAAAAGCCCCGATTTTAGATGTGACCTGTAGTTTCATTCCAGTTTGTTTTGTCTGTCTTGTTTAGACACCAACTTTTTAATTCTTGCATTTTAGTAAGAAAGCTACGTTTTTATGGATGTTAGAAACTTACTGACCTAATATTTGTAAGTGGTCTGTTTGGGCAAGTACAACTTAATTATGTAATGCAGTGTTTCAAAACAAGTTTAGCTGTTTTTTGATGTATAACGTCCCTAACTTGATGGCAGTGTACATTGTGCCACTGAATTCCCAAAGTGTACCAACTTTTTTTTACTGTGCTTCAAATAAATAGAAAACTAAATGTAGTAACTTTTCTTGCCATTCATGGTTAAATTAAGAGGCTAAATATAAATACCACACCTTCAGCAGTAAACTGAGAGTCTTGCCATAGAGATCCAACTAGACCCAGGGTGTGGAACTGTAGTGAAGAGCTGAGATCTCTTCCCATACTGCCTCTAGCTTAAGACTGGGACAAATAGCTTAACTGCCCAGTAGGCGCAGATTTTTGAACGTTGTGCTGCAATAAGTAAATAAAAGTCTTGCAGATGCTGTCAGATAATGGTAATGAAAGCTCCGCTGCAAGTAATGCAGTATGTAAAGCATTTCTTATCTTAGCTATGGATGATGGGTGGTGGGATGGCTGCACTTACCACCTTGGCAGTTACTGCTTGATACCTTCTAAAGACTTTAAGCAGAAGACTAGCAATGGTTATTTTAAAATAAATCCATAGAAAGACTTCTATTGACTGACTTCCTAACTTACGGGTTATTAATGAGATATTTATATGCTCTTAAGCTGTTTGAGATTACAGGATCTGGCCTTGCTCCGTATTGTATACCTGCCTGAAACTGCTTGGCAAAAAAAAAAACCAGAAGTGCTGCTCAAGTGATTAGGGGAGAACCTGCTAATTCATACTTGTAACTTGCTTATGTCCTCGTGCTAATTGAGTGGACTAATTTGCATAGTTCAGAATTCAATTGTATTATGGGGGCTGCAGGAACTAGTCCTGAATCTTGTAGCTGCTGGATAAATCATAAAATCCTGTATGTAAAATACAGAGAAATGAGCATTCTTGCACGATGGTTATTGTTATTATTGATGTGTAGAGGTAATGCATCAAAAGCAGTATCTAAATCTGGAGTTAATACTGCACCATACAAATAAATTCCCTTTAAGGCTTTTTTGTAGATCTGATGAATTCGTTAGCTTGCTGTTAATTTCATTAACTCCTCTGAGGAGAATTTCAAAGCATTCTGGACTCAAGGTAGTTGCTTTGCTTATTATTACACTGTACCAGATAAGCTGGGAACATGACTTCCCAGTGTAAAATGCCTTGGTGTTAACGCGGGATATATTAACCTGCTTGGCACAAAGTAGGTAGACTTAGTTGGCTGTACCTTCATGCACTTCCCCAACTATTGAGCGTTCTGTAAGTGGTTCCAATCTTAACAGTGATCTTTCCACTCCACTTGTGCTAAGCATTGGCTAATTCTAAATTCTGTGCTAAATTTTCTGTGGTTAAAACTTCAGTGTCAGATTTGCAGTATCTTAGAGTGCAGATGATAGCTCGTGAAGTACTCACTGTAAGTGCTGATACTACTTAAATGAAAAAAGTAGCATGTTGTGAAATACTGATAACAGGTAACACTGTCTGGAACATTCAGTGCACTGAATAGTGACTCAGCTGGTTTGGTGAATGCTTTTTATCTTCCCAGAAAAGTTTGGAGATTGATAACATGCTAAGACAATGAATTGTTACTCAGGAAACTCTGAATTGGCAGTTCCTGCACTGCAGACCAG
Seq C2 exon
GTGAAGATGCGAGCTGAGTGAAACTGGCGTGCTCATCCATGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002514_MULTIEX1-10/10=8-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSGALT00000003963fB11852
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]