BtaEX0032141 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016328 | SFPQ
Description
splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:HGNC:10774]
Coordinates
chr3:111145476-111154304:+
Coord C1 exon
chr3:111145476-111145597
Coord A exon
chr3:111148021-111151169
Coord C2 exon
chr3:111154256-111154304
Length
3149 bp
Sequences
Splice sites
3' ss Seq
GTTAATTACTGTTCCAATAGCGT
3' ss Score
4.07
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATCCCTATGGCTCAGGAGGCCAGAAATTTCCACCTCTAGGTGGTGGTGGTGGCATAGGTTATGAAGCTAATCCTGGCGTTCCACCGGCAACAATGAGTGGTTCCATGATGGGAAGCGACATG
Seq A exon
CGTACTGAGCGCTTTGGGCAGGGAGGTGCGGGACCTGTGGGTGGACAGGGTCCTAGAGGAATGGGGCCTGGAACTCCAGCAGGATATGGTAGAGGGAGAGAAGAGTATGAAGGCCCAAACAAAAAACCCCGATTTTAGATGTGATATCTAGGCTTTCATTCCAGTTTGTTTTTGTCTTTTCTTGTTTAGATAACCAGTCTTTTAAATTCTTGCATTTTAGTAAGAAAGCAACCTTTTTATGGATGTTAGCAGTTTATTGACCTAATATTTGTAAATGGTCTGTTGGGGCAGGTAAAATTATGTAATGCAGTGTTTGCAACAGGGGATTTTTTTTTCCTTTTTTTTTTCCTTTTTTTTTTTAAACTGTATAATGTCCCTCAAGTTACGGCAGTGTACCTGTGCCACTGAATTTCCAAAGTGTACCAATTTTTTTTTTTACTGTGCTTCAAATAAATAGAAAAAATAGTTATGATATTGATCTTCAACTTTGCCATTCATGCTTCTATGCACATTAGGCTAGGTATTCCACTTGGAAAGCATAAGCGTGTCTAGGCCTTTGAATGGCATATGCCATTTCTGGGAAATGTTATTTGTAGGCTAAGTATTGCTTTCTACTTATAAGTACCCCCTTGTTTTAAAAAGAAGAAATACTTACTGAAGTAGTTTCATGATTTGATTTGTTTGGCAAGGAAGCAAGCTGGTGCTAAGTATTTTTAAATGGCTATGTAAGCAAAGCTGAACTGTAAATCTTCATCCAGGAATGTGTATCAAGATTATGGAATGGGTGTAAGACTATTGGTAGGGGGAGAAAGTGGTTATGACTTAAATGGATCTTTTATGGCCCTATGATCTATTCTTTCCTTGAAAGTTTCTGAAGAAAAAGTGGAAAGATCATTTTGTTGCATTCCTCCATTCTTGTTTTTTAAAAAACGAGTCCCAAGCCCTACAAATGGCTTGTATTGAACTTTCACATTTGAATTAAAGATTGTTAAACATGAAGCCTTTTCATGTATTACTTTTAAGTGATTTATAAAGGTGGAGTTTAGTGTGAATAATTTAAAAATAAGAGGTATAGTTAATCATAAAGTAGGTTAGAAATGTATATACTTGTAATCTAACTTTTTACATCTCCTTGTGCTACTTCTATTGGGCAAAATCTGTAGGACTATGAAAAAAACTAGTCTGTTTTCTAAGAGCTTGTAGTGACTGTTAATAACATAGGGTTGCAGAGAACCATTCTTAGGAAACATTTTTGTTTTTCATAGTTTCCTTTTGATGTGGCACAAAATCTGGAGACAGTGGCTCGTGCTACACAGTACAGATGTTCCTTCCTCCCACCATAAAGCTTTCGGAGTGTTTCGATGGTGGTGTCAGTTTAACATCAACTTCATTGACTCTCCTTCCATCAGAGACATTTTGACTTATTAATAAAATAGATTGATACTGGTGTCTGTTAGTACAATGGGAACACCTGCTTTCCCAGTGTATTTTTAAGCAGAGGAACAATTTCCTAAAAGTAGTAGGTAAAGTAATTGAATGGTTTGGCTTTGATTTTAGCTGTTTCCATTCTAATTTGTACATTATAGAACTCTTACTGTGGAATGTGTCTTCCTCCTTTTCACCTCTTTTAGTGTTAATTGGCAAAAGTAAAATTCTAAATCAAATCTTTAAATGCTGAAGTAAGTTTAGTATTGTGCCTGAGTACAAAGGGAAACCTATAGTTGAAACAATTGAGCACTGTGCATAGGAAACCTGTTAATACTAAAACACTAGTGGAATATAAAGGCATGCCACCAAATTCTGGTTGTGTGACTGACAGGTACCTGGTGTGCTAATTAAGGGAGAGAATCTCGTTAGAAAATGTTCATTATTTCTGTTCACCAAGACACTTGGAAATGAGTAGTTCTACCATAATAATAGGAGGAAGTTTTGTCCCAAGTCATTAATTGGTGATAATGTATGAGATTTTCTGTATTGGAAACAAGGGTCTTGATTTGAAAGGAGTCCATTACAATTTGAATTGTATGGTAGGGACTCCGTTAATGATAAGAAAATAAGGGGTGTTCATGGGACACCCACAGAGGGTGAACTTGAATGTGTGGGTGGGGGCTGGTGGGGAAATGGGAAAATCTGCCTATAAAATTAATGTTTCAGTTTATTTTTCAGATTACATGCCTTTCTTTGTAAAGGGATGCTGGCACAGACCCCTAAAATAAGCTTTTCGTAGTACTGTACCTTTGAAGAGTGGTGAAGGATGCTAATGGATTATCTCCTAAAAGTTGTGGTTTTGATAGACTTACTGTGCAGAATTGCTAAACATGGTTTAGCAAATAATGTTGCTTAGTTTTAACTAAGTTTTGACTTTTATCACTGAAATAGCAGTGTATCAAGGGTTGTAAGCTACTCAGACTTTGAACAAGTCCTGCAATGTATATGATAGCCTAATGTGAATTTAAATCATCTCAAAAAGTAGATTCCTAAAAGCTGATTTACGAAACTTGGGGTGGGAAAGGGAAGGTAGTATTTTAGAGGTATTTTGGCCAGTCTTCTCATTTAAAGAAACCACCTGCCCCCATTTCCTCTTCTCCACTTTCTCTCATAATTTTAAGAGGAACACTTGATTGTTTTTAAACTAACTGCTCCTCTTACTACTCCTTATCTTTAAAAAATGCATTCTCTAAGAGATCCCAGTGTATTTAATAGGGACTTCAGAAACTTAGCCCATTGGTTCATGTTCAGTGAAACCATAATCCTCTTGGCTTAAAACACTAATTAAACTTCTAAGAAGTACTGTAAACCCCACCACTCTTTATTAGATGTATTATATCACTAATATAAATAGACAATAATTTGGGAAATTGTAATGTTACGCCTGTGCAATTTTTGTAAGTGGCATATCATGGCAGATCAAAATTCAGATACTTGGCTTTTCTTGGGCAAGCCACTAAGTTTGTGGCGGAATATTTTCTGGTGTTCTTGGACTGCAATTGTGCACTATTAAAGTAGTGGCCTGCTACATAACTGCATTTAGCCAGCATTTCTGCAGTGCGTAACTGTGAGGAACGTAGTACCGCAAATGGCAATGGACATTAGGACCCGGATGTAGTATTCCTGCTTGCTCCGAGATTCTCATTGCCGACTGCATACAG
Seq C2 exon
GTAAGAATGATTGATGTTGGCTGAGAACTGGAGTGCTCATTCACTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016328_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development